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World Community Grid Forums
Category: Completed Research
Forum: Discovering Dengue Drugs - Together
Thread: Stalled/stuck DDDT work units running Linux and Mac |
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Thread Status: Active Total posts in this thread: 28
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
I have a HP xw6000 workstation with 2 xeon 2.8 ghz cpu and 2.3 gig of ram running Kubuntu 7.10 x86. I'm running BOINC 5.10.28.
----------------------------------------This started with the newer bigger DDDT work units. Never seen it before then and this box only does DDDT. It's acting just like the mac bug mentioned in this thread. It just sits there using 0% cpu (when both w/u hang of course). I tried posting the logs, but this *%$#@ forum software errors out when trying to post them. I will try and inject them after I get this initial post up. EDIT: inject stderr.txt About to call graphics init INFO: No state to restore. Start from the beginning. ERROR: Restoring checkpoint failed. Unable to restore state! INFO:[14:05:17] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[14:06:04] End AutoGrid... Entering main_autodock Beginning AutoDock... INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 0) _maxGenSeenSoFar changed: 6750 Updating Best Energy for WU: 0.00 Finished Docking number 0 Updating Best Energy for WU: -6.35 Finished Docking number 1 Finished Docking number 2 Finished Docking number 3 Finished Docking number 4 Finished Docking number 5 Updating Best Energy for WU: -7.38 Finished Docking number 6 Finished Docking number 7 Finished Docking number 8 Finished Docking number 9 Finished Docking number 10 Finished Docking number 11 Finished Docking number 12 Finished Docking number 13 Finished Docking number 14 Finished Docking number 15 Finished Docking number 16 Finished Docking number 17 Finished Docking number 18 Finished Docking number 19 Finished Docking number 20 Finished Docking number 21 Finished Docking number 22 Finished Docking number 23 Finished Docking number 24 Finished Docking number 25 Finished Docking number 26 Finished Docking number 27 Finished Docking number 28 Finished Docking number 29 Finished Docking number 30 Finished Docking number 31 Finished Docking number 32 Finished Docking number 33 Finished Docking number 34 Finished Docking number 35 Finished Docking number 36 Finished Docking number 37 Finished Docking number 38 Finished Docking number 39 Finished Docking number 40 Finished Docking number 41 Finished Docking number 42 Finished Docking number 43 Finished Docking number 44 Finished Docking number 45 Finished Docking number 46 Finished Docking number 47 Finished Docking number 48 Finished Docking number 49 Finished Docking number 50 Finished Docking number 51 Finished Docking number 52 Finished Docking number 53 Finished Docking number 54 Finished Docking number 55 Finished Docking number 56 Finished Docking number 57 Finished Docking number 58 Finished Docking number 59 Finished Docking number 60 Finished Docking number 61 Finished Docking number 62 Finished Docking number 63 Finished Docking number 64 Finished Docking number 65 Finished Docking number 66 Finished Docking number 67 Finished Docking number 68 Finished Docking number 69 Finished Docking number 70 Finished Docking number 71 Finished Docking number 72 Finished Docking number 73 Finished Docking number 74 Finished Docking number 75 Finished Docking number 76 Finished Docking number 77 Finished Docking number 78 Finished Docking number 79 Finished Docking number 80 Finished Docking number 81 Finished Docking number 82 Finished Docking number 83 Finished Docking number 84 Finished Docking number 85 Finished Docking number 86 Finished Docking number 87 Finished Docking number 88 Finished Docking number 89 Finished Docking number 90 Finished Docking number 91 Finished Docking number 92 Finished Docking number 93 Finished Docking number 94 Finished Docking number 95 Finished Docking number 96 Finished Docking number 97 Finished Docking number 98 Finished Docking number 99 INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 100) Finished Docking number 0 Finished Docking number 1 Finished Docking number 2 Finished Docking number 3 Finished Docking number 4 Finished Docking number 5 Finished Docking number 6 Finished Docking number 7 Finished Docking number 8 Finished Docking number 9 Finished Docking number 10 Finished Docking number 11 Finished Docking number 12 Finished Docking number 13 Finished Docking number 14 Finished Docking number 15 Finished Docking number 16 Finished Docking number 17 Finished Docking number 18 Finished Docking number 19 Finished Docking number 20 Finished Docking number 21 Finished Docking number 22 Finished Docking number 23 Finished Docking number 24 Finished Docking number 25 Finished Docking number 26 Finished Docking number 27 Finished Docking number 28 Finished Docking number 29 Finished Docking number 30 Finished Docking number 31 Finished Docking number 32 Finished Docking number 33 Finished Docking number 34 Finished Docking number 35 Finished Docking number 36 Finished Docking number 37 Finished Docking number 38 Finished Docking number 39 Finished Docking number 40 Finished Docking number 41 Finished Docking number 42 Finished Docking number 43 Finished Docking number 44 Finished Docking number 45 Finished Docking number 46 Finished Docking number 47 Finished Docking number 48 Finished Docking number 49 Finished Docking number 50 Finished Docking number 51 Finished Docking number 52 Finished Docking number 53 Finished Docking number 54 Finished Docking number 55 Finished Docking number 56 Finished Docking number 57 Finished Docking number 58 Finished Docking number 59 Finished Docking number 60 Finished Docking number 61 Finished Docking number 62 Finished Docking number 63 Finished Docking number 64 Finished Docking number 65 Finished Docking number 66 Finished Docking number 67 Finished Docking number 68 Finished Docking number 69 Finished Docking number 70 Finished Docking number 71 Finished Docking number 72 Finished Docking number 73 Finished Docking number 74 Finished Docking number 75 Finished Docking number 76 Finished Docking number 77 Finished Docking number 78 Finished Docking number 79 Finished Docking number 80 Finished Docking number 81 Finished Docking number 82 Finished Docking number 83 Finished Docking number 84 Finished Docking number 85 freeglut ERROR: Function <glutTimerFunc> called without first calling 'glutInit'. Finished Docking number 86 Finished Docking number 87 Finished Docking number 88 Finished Docking number 89 Finished Docking number 90 Finished Docking number 91 Finished Docking number 92 Finished Docking number 93 Finished Docking number 94 Finished Docking number 95 Finished Docking number 96 Finished Docking number 97 Finished Docking number 98 Finished Docking number 99 Caught SIGABRT in non-graphics thread SIGABRT: abort called Stack trace (15 frames): wcg_dddt_autodock_5.15_i686-pc-linux-gnu(boinc_catch_signal+0x57)[0x80f2e17] [0xffffe420] /lib/tls/i686/cmov/libc.so.6(abort+0x101)[0xb7e69201] /lib/tls/i686/cmov/libc.so.6[0xb7e9ee5c] /lib/tls/i686/cmov/libc.so.6[0xb7ea6d65] /lib/tls/i686/cmov/libc.so.6(cfree+0x90)[0xb7eaa800] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZdlPv+0x21)[0x8150611] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs4_Rep10_M_destroyERKSaIcE+0x18)[0x81343a8] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs6assignERKSs+0xaf)[0x81344af] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z8analysisiPKSsPfS1_S1_cfPA3_fPK13energy_tablesPA128_A128_A22_fS1_iiP13nonbond_paramiiP5stateRS _ S1_cPA2048_iPiS3_SF_fciiSI_cfPK15parameter_entryfP17grid_map_set_infoccc+0x7b2)[0x80863c2] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z13main_autodockiPPc+0x8de9)[0x80c6f79] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z6workerv+0x955)[0x80e65f5] ../../projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so(_Z6foobarPv+0x14)[0xb75830e4] /lib/tls/i686/cmov/libpthread.so.0[0xb7f8d46b] /lib/tls/i686/cmov/libc.so.6(clone+0x5e)[0xb7f106de] Exiting... EDIT: Inject job_log_www.worldcommuntiygrid.org.txt 1203923289.987434 ue 8953.704674 ct 7933.735827 fe 7204383790802.000000 nm dddt0401i0518_ZINC05123672-0000_00_1 1203924548.539433 ue 8953.704674 ct 9194.422615 fe 7204383790802.000000 nm dddt0401i0518_ZINC04870826-0000_00_1 1203931695.891433 ue 8953.704674 ct 8398.560876 fe 7204383790802.000000 nm dddt0401i0518_ZINC05170849-0000_00_1 1203932052.387430 ue 8953.704674 ct 7496.568506 fe 7204383790802.000000 nm dddt0401i0518_ZINC04892875-0000_00_0 1203937494.127433 ue 8953.704674 ct 5436.007728 fe 7204383790802.000000 nm dddt0401i0517_ZINC07669810-0000_00_1 1203938951.151435 ue 8953.704674 ct 7246.744893 fe 7204383790802.000000 nm dddt0401i0518_ZINC05123674-0000_00_1 1203943007.627435 ue 8953.704674 ct 5506.564138 fe 7204383790802.000000 nm dddt0401i0519_ZINC00372126-0000_00_1 1203945334.163443 ue 8953.704674 ct 6377.302555 fe 7204383790802.000000 nm dddt0401i0519_ZINC04794479-0000_00_0 1203948802.175384 ue 8953.704674 ct 5778.761149 fe 7204383790802.000000 nm dddt0401i0521_ZINC00253419-0000_00_1 1203950673.331380 ue 8953.704674 ct 5323.504698 fe 7204383790802.000000 nm dddt0401i0520_ZINC05489806-0000_00_1 1203956523.127401 ue 8953.704674 ct 7715.049910 fe 7204383790802.000000 nm dddt0401i0521_ZINC05102020-0000_00_1 1203958751.151379 ue 8953.704674 ct 8072.848521 fe 7204383790802.000000 nm dddt0401i0521_ZINC03499029-0000_00_0 1203968101.007403 ue 8953.704674 ct 8825.143536 fe 7204383790802.000000 nm dddt0401i0522_ZINC04682510-0000_00_1 1203969334.647419 ue 8953.704674 ct 7509.709327 fe 7204383790802.000000 nm dddt0401i0522_ZINC04904606-0000_00_0 1203981038.199412 ue 8953.704674 ct 7256.437498 fe 7204383790802.000000 nm dddt0401i0523_ZINC01292229-0000_00_0 1203983420.184201 ue 8953.704674 ct 7725.478811 fe 7204383790802.000000 nm dddt0401i0523_ZINC04390625-0000_00_0 1203992497.616217 ue 8953.704674 ct 6494.877903 fe 7204383790802.000000 nm dddt0401i0524_ZINC05448242-0000_00_1 1203996687.320215 ue 8953.704674 ct 5548.594762 fe 7204383790802.000000 nm dddt0401i0524_ZINC03180765-0000_00_0 1204004157.184201 ue 8040.230380 ct 7467.090663 fe 6469378601445.000000 nm dddt0401i0526_ZINC03296798-0000_00_0 1204011000.268215 ue 8040.230380 ct 6840.503504 fe 6469378601445.000000 nm dddt0401i0526_ZINC06171329-0000_00_0 1204016788.948220 ue 8040.230380 ct 5786.369625 fe 6469378601445.000000 nm dddt0401i0531_ZINC06746819-0000_00_0 1204017689.484178 ue 93211.004584 ct 30029.552728 fe 75000000000000.000000 nm BETA_X0000045461385200502081407_1 1204021392.756207 ue 8040.230380 ct 4600.423507 fe 6469378601445.000000 nm dddt0401i0533_ZINC03341089-0000_00_0 1204024068.300195 ue 8040.230380 ct 6376.778523 fe 6469378601445.000000 nm dddt0401i0535_ZINC01188703-0000_00_0 1204025587.032210 ue 8040.230380 ct 4191.421946 fe 6469378601445.000000 nm dddt0401i0535_ZINC06833677-0000_00_1 1204029042.904225 ue 7418.149768 ct 3452.783785 fe 5968836352121.000000 nm dddt0401i0537_ZINC00620339-0000_00_0 1204033668.404218 ue 8040.230380 ct 6662.868464 fe 6469378601445.000000 nm dddt0401i0536_ZINC00705815-0000_00_1 1204039495.120222 ue 7418.149768 ct 5823.843967 fe 5968836352121.000000 nm dddt0401i0537_ZINC01116912-0000_00_1 1204045528.640227 ue 7418.149768 ct 6029.981412 fe 5968836352121.000000 nm dddt0401i0537_ZINC02628524-0000_00_0 1204051830.808230 ue 7418.149768 ct 6299.105669 fe 5968836352121.000000 nm dddt0401i0538_ZINC00739813-0000_00_1 1204056457.444214 ue 93211.004584 ct 30316.970691 fe 75000000000000.000000 nm BETA_X0000045461322200502081408_5 1204059297.664233 ue 7418.149768 ct 6150.584386 fe 5968836352121.000000 nm dddt0401i0538_ZINC01096262-0000_00_0 1204065041.580244 ue 7418.149768 ct 5741.434816 fe 5968836352121.000000 nm dddt0401i0539_ZINC02273346-0000_00_1 1204069713.428217 ue 7418.149768 ct 4669.899850 fe 5968836352121.000000 nm dddt0401j0541_ZINC00860583-0000_00_1 1204074748.584210 ue 55926.602751 ct 3958.551394 fe 45000000000000.000000 nm BETA_dddt0401j0544_ZINC00288619-0000_00_0 1204079714.692204 ue 7418.149768 ct 4967.002418 fe 5968836352121.000000 nm dddt0401j0545_ZINC02703053-0000_00_1 1204084114.288198 ue 7418.149768 ct 4396.646772 fe 5968836352121.000000 nm dddt0401j0546_ZINC02342021-0000_00_1 1204086198.564210 ue 93211.004584 ct 31022.722799 fe 75000000000000.000000 nm BETA_X0000045461386200502081407_4 1204089725.360208 ue 8327.206589 ct 5606.646393 fe 6700287127611.000000 nm dddt0401j0550_ZINC06247606-0000_00_1 1204090070.836192 ue 8327.206589 ct 3868.921792 fe 6700287127611.000000 nm dddt0401j0551_ZINC03342493-0000_00_1 1204094402.528208 ue 8327.206589 ct 4674.812156 fe 6700287127611.000000 nm dddt0401j0552_ZINC00455266-0000_00_0 1204095995.864195 ue 8327.206589 ct 5921.545270 fe 6700287127611.000000 nm dddt0401j0552_ZINC06602059-0000_00_1 1204098918.408213 ue 8327.206589 ct 4512.237996 fe 6700287127611.000000 nm dddt0401j0552_ZINC06738275-0000_00_0 1204102200.852215 ue 8327.206589 ct 6203.071667 fe 6700287127611.000000 nm dddt0401j0553_ZINC02665118-0000_00_1 1204104442.152193 ue 8327.206589 ct 5521.573076 fe 6700287127611.000000 nm dddt0401j0553_ZINC06106359-0000_00_1 1204106593.676208 ue 8327.206589 ct 4389.310314 fe 6700287127611.000000 nm dddt0401j0553_ZINC05635712-0000_00_0 1204109481.476205 ue 8327.206589 ct 5036.718774 fe 6700287127611.000000 nm dddt0401j0554_ZINC03250014-0000_00_0 1204111850.832188 ue 8327.206589 ct 5255.936475 fe 6700287127611.000000 nm dddt0401j0554_ZINC05535078-0000_00_1 1204115797.408295 ue 8327.206589 ct 6313.006537 fe 6700287127611.000000 nm dddt0401j0555_ZINC04333736-0000_00_0 1204118446.008190 ue 8327.206589 ct 6593.248051 fe 6700287127611.000000 nm dddt0401j0555_ZINC06108888-0000_00_1 1204121325.276205 ue 8327.206589 ct 5515.728711 fe 6700287127611.000000 nm dddt0401j0556_ZINC03063307-0000_00_0 1204122496.004194 ue 8327.206589 ct 4044.772782 fe 6700287127611.000000 nm dddt0401j0557_ZINC01750718-0000_00_1 1204126741.304211 ue 8327.206589 ct 5413.126299 fe 6700287127611.000000 nm dddt0401j0557_ZINC06290667-0000_00_0 1204127244.988210 ue 9101.193125 ct 4746.392630 fe 7323056836847.000000 nm dddt0401j0558_ZINC04492206-0000_00_0 1204132771.856210 ue 9101.193125 ct 6028.260742 fe 7323056836847.000000 nm dddt0401j0559_ZINC04570179-0000_00_1 1204132858.928211 ue 9101.193125 ct 5610.904535 fe 7323056836847.000000 nm dddt0401j0560_ZINC01248394-0000_00_1 1204136609.268195 ue 9101.193125 ct 3746.587710 fe 7323056836847.000000 nm dddt0401j0561_ZINC07597144-0000_00_1 1204136981.876208 ue 9101.193125 ct 4204.847600 fe 7323056836847.000000 nm dddt0401j0560_ZINC08105863-0000_00_1 1204141940.368187 ue 9101.193125 ct 5328.913036 fe 7323056836847.000000 nm dddt0401j0562_ZINC05413651-0000_00_0 1204142026.844212 ue 9101.193125 ct 5042.643770 fe 7323056836847.000000 nm dddt0401j0562_ZINC06835392-0000_00_1 1204146755.224212 ue 9101.193125 ct 4725.819344 fe 7323056836847.000000 nm dddt0401j0563_ZINC07778649-0000_00_1 1204147701.556210 ue 9101.193125 ct 5759.259930 fe 7323056836847.000000 nm dddt0401j0563_ZINC04249628-0002_00_1 1204151917.792222 ue 9101.193125 ct 5159.414442 fe 7323056836847.000000 nm dddt0401j0564_ZINC04493176-0000_00_1 1204153407.596225 ue 9101.193125 ct 5703.060418 fe 7323056836847.000000 nm dddt0401j0564_ZINC06740789-0000_00_1 1204230704.661683 ue 55926.602751 ct 28697.141457 fe 45000000000000.000000 nm BETA_dddt0401k0660_100262_1 1204232471.925660 ue 9101.193125 ct 5008.771280 fe 7323056836847.000000 nm dddt0401j0565_ZINC05041976-0000_00_0 1204233330.177664 ue 55926.602751 ct 29384.176392 fe 45000000000000.000000 nm BETA_dddt0401k0660_100128_1 1204235292.437682 ue 9101.193125 ct 4621.479262 fe 7323056836847.000000 nm dddt0401j0565_ZINC05256143-0000_00_0 1204239013.701685 ue 9101.193125 ct 5681.919097 fe 7323056836847.000000 nm dddt0401j0566_ZINC06152157-0000_00_1 1204240596.973687 ue 9101.193125 ct 5289.142550 fe 7323056836847.000000 nm dddt0401j0566_ZINC06670548-0000_00_0 1204243671.457715 ue 9076.714473 ct 4461.702839 fe 7303360676077.000000 nm dddt0401j0575_ZINC00619560-0000_00_1 1204246364.957723 ue 9076.714473 ct 5567.607953 fe 7303360676077.000000 nm dddt0401j0574_ZINC05090813-0000_00_1 1204248941.753706 ue 9076.714473 ct 5256.332499 fe 7303360676077.000000 nm dddt0401j0588_ZINC04825739-0000_00_0 1204251291.733727 ue 9076.714473 ct 4914.143114 fe 7303360676077.000000 nm dddt0401j0588_ZINC07216405-0000_00_0 1204253461.853723 ue 9076.714473 ct 4518.214370 fe 7303360676077.000000 nm dddt0401j0589_ZINC02630298-0000_00_1 1204255838.981734 ue 9354.553604 ct 4543.587956 fe 7526917271572.000000 nm dddt0401j0589_ZINC06111022-0000_00_0 1204256937.866661 ue 9354.553604 ct 3467.800848 fe 7526917271572.000000 nm dddt0401j0590_ZINC00392097-0000_00_1 1204260416.141688 ue 9354.553604 ct 4560.481012 fe 7526917271572.000000 nm dddt0401j0590_ZINC02616028-0000_00_0 1204262111.405704 ue 9354.553604 ct 5149.541825 fe 7526917271572.000000 nm dddt0401j0591_ZINC00113837-0000_00_1 1204266165.693732 ue 9354.553604 ct 5734.326373 fe 7526917271572.000000 nm dddt0401j0591_ZINC01143502-0000_00_0 1204266728.269726 ue 9354.553604 ct 4607.175930 fe 7526917271572.000000 nm dddt0401j0591_ZINC00448780-0000_00_1 1204271983.661720 ue 9354.553604 ct 5253.360313 fe 7526917271572.000000 nm dddt0401j0592_ZINC04359975-0000_00_0 1204272588.325709 ue 9354.553604 ct 6420.041227 fe 7526917271572.000000 nm dddt0401j0592_ZINC00917715-0000_00_0 1204276594.973737 ue 9354.553604 ct 4004.090239 fe 7526917271572.000000 nm dddt0401j0592_ZINC02698176-0000_00_1 1204276614.885722 ue 9354.553604 ct 4627.925226 fe 7526917271572.000000 nm dddt0401j0592_ZINC02993323-0000_00_0 1204279641.989734 ue 9354.553604 ct 3023.651153 fe 7526917271572.000000 nm dddt0401j0594_ZINC00101721-0000_00_1 1204282557.433747 ue 9224.416752 ct 5961.088544 fe 7422205774018.000000 nm dddt0401i0481_ZINC01279467-0001_00_2 1204284780.337737 ue 9354.553604 ct 5133.875409 fe 7526917271572.000000 nm dddt0401j0594_ZINC05214535-0000_00_0 1204286693.225733 ue 9354.553604 ct 4132.458262 fe 7526917271572.000000 nm dddt0401j0595_ZINC00125076-0000_00_1 1204289453.437743 ue 9354.553604 ct 4669.739839 fe 7526917271572.000000 nm dddt0401j0596_ZINC01066245-0000_00_0 1204290730.869715 ue 9354.553604 ct 4034.591208 fe 7526917271572.000000 nm dddt0401j0596_ZINC00079322-0000_00_0 1204294587.605734 ue 9354.553604 ct 5130.896660 fe 7526917271572.000000 nm dddt0401j0596_ZINC06303213-0000_00_0 1204296275.845713 ue 9354.553604 ct 5541.701210 fe 7526917271572.000000 nm dddt0401j0597_ZINC00410492-0000_00_0 1204300497.825713 ue 9354.553604 ct 5907.857217 fe 7526917271572.000000 nm dddt0401j0597_ZINC02938110-0000_00_0 1204302039.185727 ue 9354.553604 ct 5759.707958 fe 7526917271572.000000 nm dddt0401j0597_ZINC01031530-0000_00_1 1204307421.537701 ue 9354.553604 ct 6921.188547 fe 7526917271572.000000 nm dddt0401j0598_ZINC02447236-0000_00_1 1204308000.045687 ue 9354.553604 ct 5957.252304 fe 7526917271572.000000 nm dddt0401j0598_ZINC02851597-0000_00_2 1204312987.377773 ue 9354.553604 ct 5563.231680 fe 7526917271572.000000 nm dddt0401j0598_ZINC07016518-0000_00_0 1204314501.361692 ue 9354.553604 ct 6498.342120 fe 7526917271572.000000 nm dddt0401j0599_ZINC02461100-0000_00_0 1204317389.397738 ue 9354.553604 ct 4399.166930 fe 7526917271572.000000 nm dddt0401j0600_ZINC00301080-0000_00_1 1204320844.497684 ue 9354.553604 ct 6296.309494 fe 7526917271572.000000 nm dddt0401j0600_ZINC01497734-0000_00_0 1204322867.237728 ue 9354.553604 ct 5422.398878 fe 7526917271572.000000 nm dddt0401k0601_ZINC06124925-0000_00_0 1204325761.473672 ue 9354.553604 ct 4909.858846 fe 7526917271572.000000 nm dddt0401k0601_ZINC08160365-0000_00_0 1204330410.493709 ue 9354.553604 ct 7532.354742 fe 7526917271572.000000 nm dddt0401k0602_ZINC03633566-0000_00_1 1204331229.417731 ue 9354.553604 ct 5417.574577 fe 7526917271572.000000 nm dddt0401k0602_ZINC08301866-0000_00_1 1204334925.373710 ue 9354.553604 ct 4454.366379 fe 7526917271572.000000 nm dddt0401k0603_ZINC00379947-0000_00_1 1204336038.881729 ue 9354.553604 ct 4767.453947 fe 7526917271572.000000 nm dddt0401k0603_ZINC00198364-0000_00_1 1204339878.341687 ue 9354.553604 ct 4948.473259 fe 7526917271572.000000 nm dddt0401k0604_ZINC04998100-0000_00_1 1204340311.793726 ue 9354.553604 ct 4271.874975 fe 7526917271572.000000 nm dddt0401k0604_ZINC03363252-0000_00_0 1204345073.757780 ue 9354.553604 ct 4721.623082 fe 7526917271572.000000 nm dddt0401k0605_ZINC02711109-0000_00_0 1204347384.221746 ue 8099.145504 ct 6481.121043 fe 7526917271572.000000 nm dddt0401k0605_ZINC02307154-0000_00_0 1204373108.161760 ue 44093.125467 ct 28398.498795 fe 40977817655709.000000 nm X0000048820650200505161334_0 1204373193.969726 ue 44093.125467 ct 25736.120406 fe 40977817655709.000000 nm X0000048821191200505161324_1 1204378092.097734 ue 8099.145504 ct 4981.407317 fe 7526917271572.000000 nm dddt0401k0609_ZINC05500151-0000_00_0 1204399279.589753 ue 7979.205129 ct 5728.033979 fe 7415451033582.000000 nm dddt0401k0614_ZINC04821338-0000_00_1 1204400535.965743 ue 7979.205129 ct 6977.828086 fe 7415451033582.000000 nm dddt0401k0615_ZINC01327082-0000_00_0 1204406417.193730 ue 44398.599700 ct 25779.627125 fe 41261709243775.000000 nm X0000048871412200505241555_1 1204407651.653740 ue 7979.205129 ct 5497.339561 fe 7415451033582.000000 nm dddt0401k0616_ZINC06736322-0000_00_1 1204418692.013783 ue 44398.599700 ct 26435.152092 fe 41261709243775.000000 nm X0000048870041200505031317_0 1204434499.723011 ue 7979.205129 ct 5289.422691 fe 7415451033582.000000 nm dddt0401k0620_ZINC05630781-0000_00_0 1204437611.315002 ue 44398.599700 ct 27499.594616 fe 41261709243775.000000 nm X0000049570618200505180923_0 1204442573.175010 ue 7979.205129 ct 4955.953727 fe 7415451033582.000000 nm dddt0401k0620_ZINC04677615-0000_00_1 1204447037.939021 ue 7979.205129 ct 4462.794906 fe 7415451033582.000000 nm dddt0401k0621_ZINC04149173-0000_00_0 1204453104.451008 ue 44398.599700 ct 27978.996577 fe 41261709243775.000000 nm X0000049701040200505191227_1 1204457211.410980 ue 7979.205129 ct 4103.624459 fe 7415451033582.000000 nm dddt0401k0622_ZINC06831378-0000_00_0 1204462774.726987 ue 7979.205129 ct 5560.163487 fe 7415451033582.000000 nm dddt0401k0623_ZINC07483739-0000_00_1 1204468066.751009 ue 7979.205129 ct 5289.158551 fe 7415451033582.000000 nm dddt0401k0624_ZINC07929455-0000_00_0 1204473290.683032 ue 7979.205129 ct 5220.822281 fe 7415451033582.000000 nm dddt0401k0624_ZINC01210671-0000_00_1 1204473425.703000 ue 44398.599700 ct 26390.357294 fe 41261709243775.000000 nm X0000049721058200506021723_1 1204477742.823012 ue 7979.205129 ct 4450.094113 fe 7415451033582.000000 nm dddt0401k0625_ZINC01279245-0000_00_0 1204483040.854037 ue 7979.205129 ct 5277.829843 fe 7415451033582.000000 nm dddt0401k0626_ZINC03883269-0000_00_0 1204489485.259059 ue 7979.205129 ct 6441.282555 fe 7415451033582.000000 nm dddt0401k0627_ZINC03561650-0000_00_0 1204498411.615092 ue 43906.652658 ct 24962.856080 fe 40804519694056.000000 nm X0000049750238200505201017_0 1204517494.371011 ue 43906.652658 ct 27964.891696 fe 40804519694056.000000 nm X0000049940584200506071356_1 1204523687.670996 ue 7904.215148 ct 6190.902907 fe 7345759313648.000000 nm dddt0401k0631_ZINC05538353-0000_00_0 1204526229.851014 ue 43906.652658 ct 27793.064957 fe 40804519694056.000000 nm X0000049940330200505311409_0 1204529332.867000 ue 7904.215148 ct 5641.764587 fe 7345759313648.000000 nm dddt0401k0631_ZINC02463559-0000_00_0 1204529587.054999 ue 7904.215148 ct 3354.217625 fe 7345759313648.000000 nm dddt0401k0632_ZINC07661833-0000_00_0 1204534065.314998 ue 7904.215148 ct 4729.427570 fe 7345759313648.000000 nm dddt0401k0632_ZINC03908114-0000_00_1 1204534174.583000 ue 7904.215148 ct 4586.666648 fe 7345759313648.000000 nm dddt0401k0633_ZINC02220476-0000_00_1 1204538973.022996 ue 7904.215148 ct 4904.746527 fe 7345759313648.000000 nm dddt0401k0633_ZINC08140090-0000_00_0 1204538983.626979 ue 7904.215148 ct 4805.808343 fe 7345759313648.000000 nm dddt0401k0633_ZINC06640052-0000_00_0 1204542985.891000 ue 7904.215148 ct 4009.174557 fe 7345759313648.000000 nm dddt0401k0634_ZINC00399036-0000_00_0 1204544155.183002 ue 7904.215148 ct 5168.927037 fe 7345759313648.000000 nm dddt0401k0634_ZINC04518495-0000_00_1 1204548348.382997 ue 7752.091658 ct 5360.074983 fe 7204383790802.000000 nm dddt0401i0518_ZINC07829299-0000_00_2 1204548759.411002 ue 7752.091658 ct 4599.612647 fe 7204383790802.000000 nm dddt0401i0519_ZINC03510465-0000_00_2 1204552631.654979 ue 7904.215148 ct 3868.693777 fe 7345759313648.000000 nm dddt0401k0635_ZINC08049006-0000_00_0 1204553536.755002 ue 7904.215148 ct 5183.983978 fe 7345759313648.000000 nm dddt0401k0635_ZINC00197156-0000_00_1 1204557941.382990 ue 7904.215148 ct 5306.931662 fe 7345759313648.000000 nm dddt0401k0636_ZINC00707947-0000_00_0 1204557948.334968 ue 7904.215148 ct 4408.723528 fe 7345759313648.000000 nm dddt0401k0635_ZINC04955928-0000_00_1 1204560836.710977 ue 7904.215148 ct 2885.856354 fe 7345759313648.000000 nm dddt0401k0637_ZINC01018007-0000_00_0 1204563109.403000 ue 7904.215148 ct 5166.002854 fe 7345759313648.000000 nm dddt0401k0637_ZINC04387391-0000_00_1 1204565895.814981 ue 7904.215148 ct 5055.667958 fe 7345759313648.000000 nm dddt0401k0637_ZINC04281683-0000_00_0 1204566815.734987 ue 7904.215148 ct 3702.311380 fe 7345759313648.000000 nm dddt0401k0637_ZINC00550517-0000_00_1 1204570241.243002 ue 7904.215148 ct 4342.603395 fe 7345759313648.000000 nm dddt0401k0638_ZINC00484219-0000_00_0 1204573293.763005 ue 7904.215148 ct 6475.880716 fe 7345759313648.000000 nm dddt0401k0638_ZINC00924808-0000_00_0 1204574694.387001 ue 7904.215148 ct 4450.680965 fe 7345759313648.000000 nm dddt0401k0639_ZINC07948045-0000_00_1 1204579008.078997 ue 7904.215148 ct 5711.852968 fe 7345759313648.000000 nm dddt0401k0639_ZINC06428286-0000_00_0 1204580318.763000 ue 7904.215148 ct 5621.583326 fe 7345759313648.000000 nm dddt0401k0640_ZINC02938390-0000_00_1 1204583991.454999 ue 7904.215148 ct 4979.752152 fe 7345759313648.000000 nm dddt0401k0640_ZINC02724235-0000_00_1 1204584935.395006 ue 7904.215148 ct 4613.556328 fe 7345759313648.000000 nm dddt0401k0641_ZINC01233397-0000_00_0 1204588576.559002 ue 7904.215148 ct 3611.021674 fe 7345759313648.000000 nm dddt0401k0641_ZINC00528791-0000_00_0 1204590489.698999 ue 7904.215148 ct 6402.996162 fe 7345759313648.000000 nm dddt0401k0641_ZINC04965016-0000_00_1 1204594959.878998 ue 7904.215148 ct 6309.526320 fe 7345759313648.000000 nm dddt0401k0641_ZINC06669741-0000_00_0 1204595898.431001 ue 7904.215148 ct 5396.357250 fe 7345759313648.000000 nm dddt0401k0642_ZINC03474939-0000_00_0 1204600455.711042 ue 7553.960714 ct 5432.651518 fe 7020251375605.000000 nm dddt0401k0643_ZINC04889275-0000_00_0 1204603406.675002 ue 7553.960714 ct 3822.354881 fe 7020251375605.000000 nm dddt0401k0643_ZINC00072588-0000_00_1 1204603623.126981 ue 6961.208251 ct 6605.552820 fe 6469378601445.000000 nm dddt0401i0532_ZINC02625359-0000_00_2 1204608113.103007 ue 7553.960714 ct 4691.077173 fe 7020251375605.000000 nm dddt0401k0644_ZINC05782998-0000_00_0 1204609133.215007 ue 7553.960714 ct 5502.039856 fe 7020251375605.000000 nm dddt0401k0644_ZINC00802546-0000_00_0 1204613858.266997 ue 7553.960714 ct 5742.414877 fe 7020251375605.000000 nm dddt0401k0645_ZINC04878935-0000_00_1 1204614046.647000 ue 7553.960714 ct 4910.622894 fe 7020251375605.000000 nm dddt0401k0645_ZINC05003829-0000_00_0 1204619253.879008 ue 7553.960714 ct 5203.877221 fe 7020251375605.000000 nm dddt0401k0646_ZINC02722983-0000_00_0 1204619719.822978 ue 7553.960714 ct 5857.810090 fe 7020251375605.000000 nm dddt0401k0646_ZINC01191183-0000_00_1 1204624447.783002 ue 7553.960714 ct 5191.120424 fe 7020251375605.000000 nm dddt0401k0647_ZINC04452446-0000_00_0 1204625484.947109 ue 7553.960714 ct 5762.500133 fe 7020251375605.000000 nm dddt0401k0647_ZINC04524601-0000_00_0 1204630280.623001 ue 7553.960714 ct 5806.790901 fe 7020251375605.000000 nm dddt0401k0648_ZINC04980172-0000_00_1 1204630402.479017 ue 7553.960714 ct 4881.777091 fe 7020251375605.000000 nm dddt0401k0648_ZINC06913866-0000_00_1 1204635205.534998 ue 7553.960714 ct 4798.911913 fe 7020251375605.000000 nm dddt0401k0649_ZINC07274720-0000_00_1 1204635279.239004 ue 7553.960714 ct 4994.680147 fe 7020251375605.000000 nm dddt0401k0649_ZINC07828991-0000_00_1 1204639028.519002 ue 7553.960714 ct 3820.518766 fe 7020251375605.000000 nm dddt0401k0649_ZINC03232822-0000_00_1 1204641241.855007 ue 7553.960714 ct 5958.040354 fe 7020251375605.000000 nm dddt0401k0649_ZINC01230698-0000_00_0 1204644423.478999 ue 7553.960714 ct 3177.030551 fe 7020251375605.000000 nm dddt0401k0650_ZINC02525631-0000_00_1 1204645211.722998 ue 7553.960714 ct 6179.742209 fe 7020251375605.000000 nm dddt0401k0650_ZINC03590882-0000_00_1 1204649125.975001 ue 7553.960714 ct 4699.841721 fe 7020251375605.000000 nm dddt0401k0651_ZINC01980508-0000_00_0 1204650291.722997 ue 7553.960714 ct 5075.705211 fe 7020251375605.000000 nm dddt0401k0651_ZINC00487297-0000_00_0 1204655043.827008 ue 7553.960714 ct 4748.756778 fe 7020251375605.000000 nm dddt0401k0652_ZINC00038459-0000_00_0 1204655360.787004 ue 7553.960714 ct 6233.997600 fe 7020251375605.000000 nm dddt0401k0652_ZINC00656517-0000_00_0 1204660148.327001 ue 7553.960714 ct 5101.602829 fe 7020251375605.000000 nm dddt0401k0653_ZINC00132623-0000_00_0 1204661481.754998 ue 7553.960714 ct 6117.446316 fe 7020251375605.000000 nm dddt0401k0653_ZINC04607321-0000_00_0 1204664594.214990 ue 6669.040696 ct 4442.433634 fe 6197853535626.000000 nm dddt0401k0654_ZINC00352254-0000_00_1 1204667762.619066 ue 6669.040696 ct 6277.028289 fe 6197853535626.000000 nm dddt0401k0654_ZINC04312164-0000_00_0 1204669174.995000 ue 6669.040696 ct 4578.822158 fe 6197853535626.000000 nm dddt0401k0655_ZINC00131662-0000_00_1 1204672471.814976 ue 6669.040696 ct 4706.978167 fe 6197853535626.000000 nm dddt0401k0655_ZINC06845679-0000_00_0 1204674557.454980 ue 6669.040696 ct 5361.471070 fe 6197853535626.000000 nm dddt0401k0656_ZINC07078862-0000_00_1 1204678872.095001 ue 6669.040696 ct 5850.717646 fe 6197853535626.000000 nm dddt0401k0657_ZINC05861250-0000_00_2 1204679824.986983 ue 6669.040696 ct 5508.188240 fe 6197853535626.000000 nm dddt0401k0656_ZINC01924111-0000_00_0 1204685824.411038 ue 6669.040696 ct 6760.710516 fe 6197853535626.000000 nm dddt0401k0658_ZINC06566147-0000_00_0 1204692464.414990 ue 6669.040696 ct 6635.142670 fe 6197853535626.000000 nm dddt0401k0660_ZINC00749548-0000_00_0 1204696369.935020 ue 6669.040696 ct 3903.731967 fe 6197853535626.000000 nm dddt0401k0660_ZINC07657771-0000_00_1 1204720449.114996 ue 27031.131237 ct 24079.539878 fe 25121303040378.000000 nm dddt0401l0664_100218_1 1204747601.303018 ue 27031.131237 ct 27153.436983 fe 25121303040378.000000 nm dddt0401l0664_100051_1 1204763071.383564 ue 6669.040696 ct 5743.378938 fe 6197853535626.000000 nm dddt0401k0658_ZINC06401585-0000_00_1 1204793149.639535 ue 23320.236975 ct 27302.142275 fe 25121303040378.000000 nm dddt0401l0682_100031_1 1204815050.951527 ue 23320.236975 ct 21900.792714 fe 25121303040378.000000 nm dddt0401l0688_100291_1 1204819983.019528 ue 6779.747906 ct 4929.172053 fe 7303360676077.000000 nm dddt0401j0573_ZINC04317234-0000_00_2 1204834037.955579 ue 23320.236975 ct 25005.538747 fe 25121303040378.000000 nm dddt0401l0674_100294_1 1204848649.715540 ue 23320.236975 ct 24427.698634 fe 25121303040378.000000 nm dddt0401l0694_100338_0 1204898435.219544 ue 23320.236975 ct 24295.518373 fe 25121303040378.000000 nm dddt0401l0698_100150_1 1204920316.895222 ue 23320.236975 ct 21828.752209 fe 25121303040378.000000 nm dddt0401l0704_100353_0 hehe took a couple edits but I got it posted  [Edit 6 times, last edit by Former Member at Mar 29, 2008 3:35:43 PM] |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hello brinktastee and other crunchers,
I've had the same stalled-WU experience on the very first WCG-WU (DDDT) my computer crunched as a dual-boot Ubuntu 7.10 x86 Boinc 5.10.8. (Done 3 valid WU from another project before). The dddt0401l0686_ 100074_ 0-- was, after rebooting my computer, after all valid. My next WU: HCC has run fine. My computer is a one core AMD Sempron 3000+ 1.8 G Hz, 1.4 GB ram. My log information has some similarity with brinktastee's. If someone thinks its useful I will post it in this, or another thread. Have I nice day, Path7. |
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Gollumer
Senior Cruncher Joined: Mar 23, 2006 Post Count: 194 Status: Offline |
I've had problems with the new "tested" ddd units getting hung-up.
----------------------------------------They had this problem in beta, why were they moved to production? [Edit 2 times, last edit by Gollumer at Mar 8, 2008 2:40:05 PM] |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
I noticed this on the console output and though I would post it...
connect: Operation now in progress *** glibc detected *** wcg_dddt_autodock_5.15_i686-pc-linux-gnu: double free or corruption (!prev): 0x0d022bc8 *** ======= Backtrace: ========= /lib/tls/i686/cmov/libc.so.6[0xb7e88d65] /lib/tls/i686/cmov/libc.so.6(cfree+0x90)[0xb7e8c800] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZdlPv+0x21)[0x8150611] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs4_Rep10_M_destroyERKSaIcE+0x18)[0x 81343a8] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs6assignERKSs+0xaf)[0x81344af] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z8analysisiPKSsPfS1_S1_cfPA3_fPK13ener gy_tablesPA128_A128_A22_fS1_iiP13nonbond_paramiiP5stateRS_S1_cPA2048_iPiS3_SF_fc iiSI_cfPK15parameter_entryfP17grid_map_set_infoccc+0x7b2)[0x80863c2] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z13main_autodockiPPc+0x8de9)[0x80c6f79 ] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z6workerv+0x955)[0x80e65f5] ../../projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-g nu.so(_Z6foobarPv+0x14)[0xb75650e4] /lib/tls/i686/cmov/libpthread.so.0[0xb7f6f46b] /lib/tls/i686/cmov/libc.so.6(clone+0x5e)[0xb7ef26de] ======= Memory map: ======== 08048000-08197000 r-xp 00000000 08:11 1638563 /home/brink/BOINC/projects/www. worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu 08197000-08199000 rwxp 0014e000 08:11 1638563 /home/brink/BOINC/projects/www. worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu 08199000-0d048000 rwxp 08199000 00:00 0 [heap] a9d00000-a9d21000 rwxp a9d00000 00:00 0 a9d21000-a9e00000 ---p a9d21000 00:00 0 a9eed000-b62d4000 rwxp a9eed000 00:00 0 b62d4000-b62d5000 ---p b62d4000 00:00 0 b62d5000-b6ad5000 rwxp b62d5000 00:00 0 b6ad5000-b6ad6000 ---p b6ad5000 00:00 0 b6ad6000-b72d6000 rwxp b6ad6000 00:00 0 b72d6000-b72eb000 r-xp 00000000 08:11 14356194 /usr/lib/libICE.so.6.3.0 b72eb000-b72ed000 rwxp 00014000 08:11 14356194 /usr/lib/libICE.so.6.3.0 b72ed000-b72ee000 rwxp b72ed000 00:00 0 b72ee000-b72f5000 r-xp 00000000 08:11 14356196 /usr/lib/libSM.so.6.0.0 b72f5000-b72f6000 rwxp 00006000 08:11 14356196 /usr/lib/libSM.so.6.0.0 b72f6000-b7343000 r-xp 00000000 08:11 14356198 /usr/lib/libXt.so.6.0.0 b7343000-b7347000 rwxp 0004c000 08:11 14356198 /usr/lib/libXt.so.6.0.0 b7347000-b734b000 r-xp 00000000 08:11 14356125 /usr/lib/libXdmcp.so.6.0.0 b734b000-b734c000 rwxp 00003000 08:11 14356125 /usr/lib/libXdmcp.so.6.0.0 b734c000-b7361000 r-xp 00000000 08:11 14356265 /usr/lib/libXmu.so.6.2.0 b7361000-b7362000 rwxp 00015000 08:11 14356265 /usr/lib/libXmu.so.6.2.0 b7362000-b744f000 r-xp 00000000 08:11 14356127 /usr/lib/libX11.so.6.2.0 b744f000-b7453000 rwxp 000ed000 08:11 14356127 /usr/lib/libX11.so.6.2.0 b7453000-b74eb000 r-xp 00000000 08:11 14359264 /usr/lib/libGL.so.1.2 b74eb000-b74f0000 rwxp 00098000 08:11 14359264 /usr/lib/libGL.so.1.2 b74f0000-b74f3000 rwxp b74f0000 00:00 0 b74f8000-b7502000 r-xp 00000000 08:11 8519694 /lib/libgcc_s.so.1 b7502000-b7503000 rwxp 0000a000 08:11 8519694 /lib/libgcc_s.so.1 b7503000-b7504000 rwxp b7503000 00:00 0 b7504000-b7506000 rwxs 00000000 00:09 149553155 /SYSV01110011 (deleted) b7506000-b760a000 r-xp 00000000 08:11 1638715 /home/brink/BOINC/projects/www. worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so b760a000-b760e000 rwxp 00103000 08:11 1638715 /home/brink/BOINC/projects/www. worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so b760e000-b761d000 rwxp b760e000 00:00 0 b761d000-b761e000 ---p b761d000 00:00 0 b761e000-b7e1f000 rwxp b761e000 00:00 0 b7e1f000-b7f63000 r-xp 00000000 08:11 8519701 /lib/tls/i686/cmov/libc-2.6.1.s o b7f63000-b7f64000 r-xp 00143000 08:11 8519701 /lib/tls/i686/cmov/libc-2.6.1.s o b7f64000-b7f66000 rwxp 00144000 08:11 8519701 /lib/tls/i686/cmov/libc-2.6.1.s o b7f66000-b7f6a000 rwxp b7f66000 00:00 0 b7f6a000-b7f7e000 r-xp 00000000 08:11 8519715 /lib/tls/i686/cmov/libpthread-2 .6.1.so b7f7e000-b7f80000 rwxp 00013000 08:11 8519715 /lib/tls/i686/cmov/libpthread-2 .6.1.so b7f80000-b7f82000 rwxp b7f80000 00:00 0 b7f82000-b7f84000 r-xp 00000000 08:11 8519704 /lib/tls/i686/cmov/libdl-2.6.1. so b7f84000-b7f86000 rwxp 00001000 08:11 8519704 /lib/tls/i686/cmov/libdl-2.6.1. so b7f86000-b7f88000 r-xp 00000000 08:11 14356123 /usr/lib/libXau.so.6.0.0 b7f88000-b7f89000 rwxp 00001000 08:11 14356123 /usr/lib/libXau.so.6.0.0 b7f89000-b7f96000 r-xp 00000000 08:11 14356129 /usr/lib/libXext.so.6.4.0 b7f96000-b7f97000 rwxp 0000d000 08:11 14356129 /usr/lib/libXext.so.6.4.0 b7f97000-b7f99000 rwxs 00000000 00:09 149553155 /SYSV01110011 (deleted) b7f99000-b7f9b000 rwxp b7f99000 00:00 0 b7f9b000-b7fb5000 r-xp 00000000 08:11 8521191 /lib/ld-2.6.1.so b7fb5000-b7fb7000 rwxp 00019000 08:11 8521191 /lib/ld-2.6.1.so bfcc4000-bfcda000 rwxp bfcc4000 00:00 0 [stack] ffffe000-fffff000 r-xp 00000000 00:00 0 [vdso] SIGILL: illegal instruction Stack trace (46 frames): ./boincmgr[0x8177ebf] [0xffffe420] [0x88b52f0] ./boincmgr[0x806f2f6] ./boincmgr[0x835cb9b] ./boincmgr[0x835d253] ./boincmgr[0x835d58b] ./boincmgr[0x8271927] ./boincmgr[0x835d531] ./boincmgr[0x8271927] ./boincmgr[0x835d531] ./boincmgr[0x824f059] /usr/lib/libgtk-x11-2.0.so.0(_gtk_marshal_VOID__POINTER_UINT+0x5d)[0xb7cc6ecd] /usr/lib/libgobject-2.0.so.0(g_closure_invoke+0x122)[0xb78f1772] /usr/lib/libgobject-2.0.so.0[0xb7902611] /usr/lib/libgobject-2.0.so.0(g_signal_emit_valist+0x8c7)[0xb7903847] /usr/lib/libgobject-2.0.so.0(g_signal_emit+0x29)[0xb7903a09] /usr/lib/libgtk-x11-2.0.so.0[0xb7cde834] /usr/lib/libgtk-x11-2.0.so.0[0xb7ce5f4b] /usr/lib/libgobject-2.0.so.0(g_cclosure_marshal_VOID__OBJECT+0x59)[0xb78fe119] /usr/lib/libgobject-2.0.so.0[0xb78eff89] /usr/lib/libgobject-2.0.so.0(g_closure_invoke+0x122)[0xb78f1772] /usr/lib/libgobject-2.0.so.0[0xb79027ba] /usr/lib/libgobject-2.0.so.0(g_signal_emit_valist+0x8c7)[0xb7903847] /usr/lib/libgobject-2.0.so.0(g_signal_emit+0x29)[0xb7903a09] /usr/lib/libgtk-x11-2.0.so.0(gtk_container_remove+0xa4)[0xb7c2d314] /usr/lib/libgtk-x11-2.0.so.0(gtk_notebook_remove_page+0x6a)[0xb7ce093a] ./boincmgr[0x8215386] ./boincmgr[0x822543c] ./boincmgr[0x8215402] ./boincmgr[0x806da5b] ./boincmgr[0x80785d4] ./boincmgr[0x8223db6] ./boincmgr[0x8224378] ./boincmgr[0x81cb499] /usr/lib/libglib-2.0.so.0[0xb7845551] /usr/lib/libglib-2.0.so.0(g_main_context_dispatch+0x17c)[0xb784711c] /usr/lib/libglib-2.0.so.0[0xb784a55f] /usr/lib/libglib-2.0.so.0(g_main_loop_run+0x1a9)[0xb784a909] /usr/lib/libgtk-x11-2.0.so.0(gtk_main+0xb4)[0xb7cc49e4] ./boincmgr[0x828fde0] ./boincmgr[0x822420d] ./boincmgr[0x83128dd] ./boincmgr[0x80879a0] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb7576050] ./boincmgr(realloc+0x9d)[0x80600e1] Exiting... |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
cricket...cricket...cricket...
bueller...bueller...bueller |
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Dark Angel
Veteran Cruncher Australia Joined: Nov 11, 2005 Post Count: 721 Status: Offline Project Badges: 
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I aborted one of the new ones this morning and had another stuck yesterday at about 90seconds in. The second ran fine after I suspended and restarted the client but the first wouldn't. The system runs memtest fine for 14hrs straight, no errors, and runs CPUBurn, a load test app, with no errors. The unit failures are specific to DDDT units and are not typical. At my rate of work I might get one or two at most a week, tops.
----------------------------------------My Athlon XP3000+ system gets the same thing, again with NO errors in memtest or 'burn. This has not been resolved since this thread http://www.worldcommunitygrid.org/forums/wcg/viewthread?thread=17066  Currently being moderated under false pretences |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
I went ahead and changed all my Linux boxes to run anything but this project. I cant get two in a row without it hanging. I also tried the new client 5.10.45 with no luck.
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[B.S] idb
Cruncher Joined: Jan 11, 2008 Post Count: 1 Status: Offline |
Me to...
Ubuntu 7.10 and BOINC 5.10.45 Work unit got to 66.555% and just stopped. Shutting down and restarting the core got it going again without any, apparent, problem. Ian |
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Sekerob
Ace Cruncher Joined: Jul 24, 2005 Post Count: 20043 Status: Offline |
How many running DDDT concurrently and how much RAM and Disk is allocated (not the theoretical permitted, but the real). I'm presently not sure with something going related to the website profiles not sticking until Thursday due a bad connect (see kremmen/knreed exchange). Look at the startup log and check memory allocation and disk permission if they jive.
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WCG
Please help to make the Forums an enjoyable experience for All! |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hello Sekerob and all others interested in crunching DDD-T,
----------------------------------------Since march 5th I'm (also) running Boinc on Ubuntu 7.10. Opt in for all except beta, I had 2 out of 3 DDD-T Wu's which stalled. The latest was last night. My computer is a one core AMD Sempron 3000+ 1.8 G Hz, 1.4 GB ram. While stalled, the WU used about 27 MB of RAM, CPU= 0%, total disk usage about 80 MB. I was doing an (advised) update of the help & support documents in the same period the WU got stalled. However I'm not sure this happened at exactly the same time. There was no relevant information from the stdoutdae.txt file. Here's the result-log (shortened by writing -Etc- instead of repeating values). Result Log <core_client_version>5.10.8</core_client_version> <![CDATA[ <stderr_txt> About to call graphics init INFO: No state to restore. Start from the beginning. ERROR: Restoring checkpoint failed. Unable to restore state! INFO:[06:35:10] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[06:36:25] End AutoGrid... Entering main_autodock Beginning AutoDock... INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 0) _maxGenSeenSoFar changed: 6750 Updating Best Energy for WU: 0.00 Finished Docking number 0 Finished Docking number 1 Updating Best Energy for WU: -7.37 Finished Docking number 2 Finished Docking number 3 Updating Best Energy for WU: -7.55 Finished Docking number 4 Finished Docking number 5 Finished Docking number 6 Finished Docking number 7 Finished Docking number 8 Updating Best Energy for WU: -7.62 Finished Docking number 9 -Etc- Finished Docking number 17 Finished Docking number 18 Updating Best Energy for WU: -7.65 Finished Docking number 19 Finished Docking number 20 -Etc- Finished Docking number 31 Finished Docking number 32 Updating Best Energy for WU: -7.91 Finished Docking number 33 Finished Docking number 34 Finished Docking number 35 Finished Docking number 36 Finished Docking number 37 Finished Docking number 38 Updating Best Energy for WU: -7.93 Finished Docking number 39 Updating Best Energy for WU: -8.01 Finished Docking number 40 Finished Docking number 41 -Etc- Finished Docking number 98 Finished Docking number 99 INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 100) Finished Docking number 0 Finished Docking number 1 Finished Docking number 2 -Etc- Finished Docking number 98 Finished Docking number 99 INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 200) Finished Docking number 0 Finished Docking number 1 -Etc- Finished Docking number 98 Finished Docking number 99 INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 300) Finished Docking number 0 Finished Docking number 1 -Etc- Finished Docking number 37 Finished Docking number 38 Client requesting an exit About to call graphics init Restoring grahics. bestEnergy: -8.610730 maxGenSeen: 6750 AG Check: Found receptor.A.map Entering main_autodock Beginning AutoDock... INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 339) Finished Docking number 39 Finished Docking number 40 Finished Docking number 41 -Etc- Finished Docking number 98 Finished Docking number 99 INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 400) Finished Docking number 0 Finished Docking number 1 -Etc- Finished Docking number 30 Finished Docking number 31 freeglut ERROR: Function <glutTimerFunc> called without first calling 'glutInit'. Finished Docking number 32 Finished Docking number 33 -Etc- Finished Docking number 97 Finished Docking number 98 Finished Docking number 99 *** glibc detected *** wcg_dddt_autodock_5.15_i686-pc-linux-gnu: double free or corruption (!prev): 0x0d01fd68 *** ======= Backtrace: ========= /lib/tls/i686/cmov/libc.so.6[0xb7e4ad65] /lib/tls/i686/cmov/libc.so.6(cfree+0x90)[0xb7e4e800] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZdlPv+0x21)[0x8150611] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs4_Rep10_M_destroyERKSaIcE+0x18)[0x81343a8] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs6assignERKSs+0xaf)[0x81344af] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z8analysisiPKSsPfS1_S1_cfPA3_fPK13energy_tablesPA128_A128_A22_fS1_iiP13nonbond _paramiiP5stateRS_S1_cPA2048_iPiS3_SF_fciiSI_cfPK15parameter_entryfP17grid_map_set_infoccc+0x7b2)[0x 80863c2] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z13main_autodockiPPc+0x8de9)[0x80c6f79] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z6workerv+0x955)[0x80e65f5] ../../projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so(_Z6foobarPv+0x14)[0xb75270e4] /lib/tls/i686/cmov/libpthread.so.0[0xb7f3146b] /lib/tls/i686/cmov/libc.so.6(clone+0x5e)[0xb7eb46de] ======= Memory map: ======== 08048000-08197000 r-xp 00000000 03:06 309171 /var/lib/boinc-client/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu 08197000-08199000 rwxp 0014e000 03:06 309171 /var/lib/boinc-client/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu 08199000-0d0ca000 rwxp 08199000 00:00 0 [heap] a9d00000-a9d21000 rwxp a9d00000 00:00 0 a9d21000-a9e00000 ---p a9d21000 00:00 0 a9eb1000-b6298000 rwxp a9eb1000 00:00 0 b6298000-b6299000 ---p b6298000 00:00 0 b6299000-b6a99000 rwxp b6299000 00:00 0 b6a99000-b6a9a000 ---p b6a99000 00:00 0 b6a9a000-b729a000 rwxp b6a9a000 00:00 0 b729a000-b72af000 r-xp 00000000 03:06 326412 /usr/lib/libICE.so.6.3.0 b72af000-b72b1000 rwxp 00014000 03:06 326412 /usr/lib/libICE.so.6.3.0 b72b1000-b72b2000 rwxp b72b1000 00:00 0 b72b2000-b72b9000 r-xp 00000000 03:06 326430 /usr/lib/libSM.so.6.0.0 b72b9000-b72ba000 rwxp 00006000 03:06 326430 /usr/lib/libSM.so.6.0.0 b72ba000-b7307000 r-xp 00000000 03:06 326481 /usr/lib/libXt.so.6.0.0 b7307000-b730b000 rwxp 0004c000 03:06 326481 /usr/lib/libXt.so.6.0.0 b730b000-b730f000 r-xp 00000000 03:06 326451 /usr/lib/libXdmcp.so.6.0.0 b730f000-b7310000 rwxp 00003000 03:06 326451 /usr/lib/libXdmcp.so.6.0.0 b7310000-b7319000 r-xp 00000000 03:06 326606 /usr/lib/libdrm.so.2.3.0 b7319000-b731a000 rwxp 00008000 03:06 326606 /usr/lib/libdrm.so.2.3.0 b731a000-b733d000 r-xp 00000000 03:06 423687 /lib/tls/i686/cmov/libm-2.6.1.so b733d000-b733f000 rwxp 00023000 03:06 423687 /lib/tls/i686/cmov/libm-2.6.1.so b733f000-b7343000 r-xp 00000000 03:06 326457 /usr/lib/libXfixes.so.3.1.0 b7343000-b7344000 rwxp 00003000 03:06 326457 /usr/lib/libXfixes.so.3.1.0 b7344000-b7351000 r-xp 00000000 03:06 326455 /usr/lib/libXext.so.6.4.0 b7351000-b7352000 rwxp 0000d000 03:06 326455 /usr/lib/libXext.so.6.4.0 b7352000-b7367000 r-xp 00000000 03:06 326467 /usr/lib/libXmu.so.6.2.0 b7367000-b7368000 rwxp 00015000 03:06 326467 /usr/lib/libXmu.so.6.2.0 b7368000-b7455000 r-xp 00000000 03:06 326434 /usr/lib/libX11.so.6.2.0 b7455000-b7459000 rwxp 000ed000 03:06 326434 /usr/lib/libX11.so.6.2.0 b7459000-b74b7000 r-xp 00000000 03:06 326403 /usr/lib/libGL.so.1.2 b74b7000-b74b9000 rwxp 0005d000 03:06 326403 /usr/lib/libGL.so.1.2 b74b9000-b74ba000 rwxp b74b9000 00:00 0 b74bb000-b74c5000 r-xp 00000000 03:06 390211 /lib/libgcc_s.so.1 b74c5000-b74c6000 rwxp 0000a000 03:06 390211 /lib/libgcc_s.so.1 b74c6000-b74c8000 rwxs 00000000 00:09 0 /SYSV01066f4e (deleted) b74c8000-b75cc000 r-xp 00000000 03:06 309193 /var/lib/boinc-client/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so b75cc000-b75d0000 rwxp 00103000 03:06 309193 /var/lib/boinc-client/projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so b75d0000-b75df000 rwxp b75d0000 00:00 0 b75df000-b75e0000 ---p b75df000 00:00 0 b75e0000-b7de1000 rwxp b75e0000 00:00 0 b7de1000-b7f25000 r-xp 00000000 03:06 423683 /lib/tls/i686/cmov/libc-2.6.1.so b7f25000-b7f26000 r-xp 00143000 03:06 423683 /lib/tls/i686/cmov/libc-2.6.1.so b7f26000-b7f28000 rwxp 00144000 03:06 423683 /lib/tls/i686/cmov/libc-2.6.1.so b7f28000-b7f2c000 rwxp b7f28000 00:00 0 b7f2c000-b7f40000 r-xp 00000000 03:06 423697 /lib/tls/i686/cmov/libpthread-2.6.1.so b7f40000-b7f42000 rwxp 00013000 03:06 423697 /lib/tls/i686/cmov/libpthread-2.6.1.so b7f42000-b7f44000 rwxp b7f42000 00:00 0 b7f44000-b7f46000 r-xp 00000000 03:06 423686 /lib/tls/i686/cmov/libdl-2.6.1.so b7f46000-b7f48000 rwxp 00001000 03:06 423686 /lib/tls/i686/cmov/libdl-2.6.1.so b7f48000-b7f49000 rwxp b7f48000 00:00 0 b7f49000-b7f4b000 r-xp 00000000 03:06 326440 /usr/lib/libXau.so.6.0.0 b7f4b000-b7f4c000 rwxp 00001000 03:06 326440 /usr/lib/libXau.so.6.0.0 b7f4c000-b7f4e000 r-xp 00000000 03:06 326449 /usr/lib/libXdamage.so.1.1.0 b7f4e000-b7f4f000 rwxp 00001000 03:06 326449 /usr/lib/libXdamage.so.1.1.0 b7f4f000-b7f53000 r-xp 00000000 03:06 326491 /usr/lib/libXxf86vm.so.1.0.0 b7f53000-b7f54000 rwxp 00003000 03:06 326491 /usr/lib/libXxf86vm.so.1.0.0 b7f54000-b7f56000 rwxs 00000000 00:09 0 /SYSV01066f4e (deleted) b7f56000-b7f58000 rwxp b7f56000 00:00 0 b7f58000-b7f72000 r-xp 00000000 03:06 390157 /lib/ld-2.6.1.so b7f72000-b7f74000 rwxp 00019000 03:06 390157 /lib/ld-2.6.1.so bfe9f000-bfeb4000 rwxp bfe9f000 00:00 0 [stack] ffffe000-fffff000 r-xp 00000000 00:00 0 [vdso] Caught SIGABRT in non-graphics thread SIGABRT: abort called Stack trace (15 frames): wcg_dddt_autodock_5.15_i686-pc-linux-gnu(boinc_catch_signal+0x57)[0x80f2e17] [0xffffe420] /lib/tls/i686/cmov/libc.so.6(abort+0x101)[0xb7e0d201] /lib/tls/i686/cmov/libc.so.6[0xb7e42e5c] /lib/tls/i686/cmov/libc.so.6[0xb7e4ad65] /lib/tls/i686/cmov/libc.so.6(cfree+0x90)[0xb7e4e800] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZdlPv+0x21)[0x8150611] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs4_Rep10_M_destroyERKSaIcE+0x18)[0x81343a8] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_ZNSs6assignERKSs+0xaf)[0x81344af] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z8analysisiPKSsPfS1_S1_cfPA3_fPK13energy_tablesPA128_A128_A22_fS1_iiP13nonbond_paramiiP5stateRS _S1_cPA2048_iPiS3_SF_fciiSI_cfPK15parameter_entryfP17grid_map_set_infoccc+0x7b2)[0x80863c2] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z13main_autodockiPPc+0x8de9)[0x80c6f79] wcg_dddt_autodock_5.15_i686-pc-linux-gnu(_Z6workerv+0x955)[0x80e65f5] ../../projects/www.worldcommunitygrid.org/wcg_dddt_autodock_5.15_i686-pc-linux-gnu.so(_Z6foobarPv+0x14)[0xb75270e4] /lib/tls/i686/cmov/libpthread.so.0[0xb7f3146b] /lib/tls/i686/cmov/libc.so.6(clone+0x5e)[0xb7eb46de] Exiting... Client requesting an exit About to call graphics init Restoring grahics. bestEnergy: -8.610730 maxGenSeen: 6750 AG Check: Found receptor.A.map Entering main_autodock Beginning AutoDock... INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 500) INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 500) Finished Docking number 0 Finished Docking number 1 Finished Docking number 2 Finished Docking number 3 Finished Docking number 4 -Etc- Finished Docking number 96 Finished Docking number 97 Finished Docking number 98 Finished Docking number 99 ________________________________________________________________________________ autodock4: Successful Completion on "World Community Grid device" ________________________________________________________________________________ INFO:[07:56:03] Start AutoGrid... autogrid: autogrid4: Successful Completion. INFO:[07:57:01] End AutoGrid... Entering main_autodock Beginning AutoDock... INFO: Setting num_generations: 27000 About to enter main loop...(dockings already completed: 600) Finished Docking number 0 ________________________________________________________________________________ autodock4: Successful Completion on "World Community Grid device" ________________________________________________________________________________ </stderr_txt> ]]> Return to Top Edited: text was too broad. Have a nice day, Path7. [Edit 1 times, last edit by Former Member at Mar 16, 2008 4:33:45 PM] |
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