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armstrdj
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Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

Please post all issues/questions related to this beta test here.

Announcement: http://www.worldcommunitygrid.org/forums/wcg/viewthread_thread,37906

Thanks,
armstrdj
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Coleslaw
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

Any news on how many went out or if there are any more?
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Bearcat
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

Did they come out yet? I don't have any.
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armstrdj
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

Yes all new work has gone out.

Thanks,
armstrdj
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

I picked up some between 21:22 and 21:39 GMT, but none after that. There are now 4 Valid with the rest in PVal state. All the Result Logs look normal. I wasn't around to test any checkpointing etc.

Amazingly, two machines picked up the same unit, both these results are mine:

BETA_ ugm1_ ugm1_ 10375_ 1368_ 0-- 728 Valid 07/04/15 21:37:12 07/04/15 23:47:43 2.05 68.0 / 76.9
BETA_ ugm1_ ugm1_ 10375_ 1368_ 1-- 728 Valid 07/04/15 21:37:12 08/04/15 00:10:33 2.48 85.9 / 76.9
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Crystal Pellet
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

Amazingly, two machines picked up the same unit, both these results are mine:

BETA_ ugm1_ ugm1_ 10375_ 1368_ 0-- 728 Valid 07/04/15 21:37:12 07/04/15 23:47:43 2.05 68.0 / 76.9
BETA_ ugm1_ ugm1_ 10375_ 1368_ 1-- 728 Valid 07/04/15 21:37:12 08/04/15 00:10:33 2.48 85.9 / 76.9

Amazingly the second task needs 26 minutes (21%) more time. confused
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JmBoullier
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

The amount of data written to disk has been effectively considerably reduced, great.

But still, file result.tmp is still written in real time** which seems useless when the application is not in debugging mode: data written in this file between checkpoints will never be used by anybody in the users community.

Wouldn't it be possible to buffer it until the next effective checkpoint?

Edit:
** As shown by Windows Resource Monitor (Disk) during execution.
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Team--> Decrypthon -->Statistics/Join -->Thread
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[Edit 1 times, last edit by JmBoullier at Apr 8, 2015 9:49:22 AM]
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Former Member
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

Yes, I'd help to squeeze out the last 0.0001% efficiency I suppose.

On doing the daily reviewing of the RS pages, a thousands of miles away ancient had grabbed one, PVal, with a rather mundane log [A local start time like there is the end time would be nice]. Being so far away, no way to test the key function, checkpoint recovery. The end of the perpetual result writing is taken for granted as having been achieved.

BETA_ ugm1_ ugm1_ 10375_ 2126_ 1-- 728 Pending Validation 4/7/15 21:18:21 4/8/15 08:46:41 3.05 59.9 / 0.0
BETA_ ugm1_ ugm1_ 10375_ 2126_ 0-- - In Progress 4/7/15 21:18:20 4/11/15 21:18:20 0.00 0.0 / 0.0

Result Name: BETA_ ugm1_ ugm1_ 10375_ 2126_ 1--
<core_client_version>7.4.35</core_client_version>
<![CDATA[
<stderr_txt>
Unable to open checkpoint file starting from 0
500 query sequences compared.
1000 query sequences compared.
1500 query sequences compared.
2000 query sequences compared.
2500 query sequences compared.
3000 query sequences compared.
3500 query sequences compared.
4000 query sequences compared.
4500 query sequences compared.
5000 query sequences compared.
5500 query sequences compared.
6000 query sequences compared.
6500 query sequences compared.
7000 query sequences compared.
7500 query sequences compared.
8000 query sequences compared.
8500 query sequences compared.
9000 query sequences compared.
9500 query sequences compared.
10000 query sequences compared.
10500 query sequences compared.
11000 query sequences compared.
11500 query sequences compared.
12000 query sequences compared.
12500 query sequences compared.
13000 query sequences compared.
13500 query sequences compared.
14000 query sequences compared.
14500 query sequences compared.
15000 query sequences compared.
15500 query sequences compared.
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16500 query sequences compared.
17000 query sequences compared.
17500 query sequences compared.
18000 query sequences compared.
18500 query sequences compared.
19000 query sequences compared.
19500 query sequences compared.
Run complete, CPU time: 10992.281250
10:46:50 (4364): called boinc_finish(0)

</stderr_txt>
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Sgt.Joe
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

Picked up one on a Win 7 -64 (AMD 9150e 1.8 GHz) machine. It seems to run just fine after a restart, but the estimated time to completion appears to be out of whack, being grossly overestimated. Currently 35% completed in 2 hours 10 minutes with estimated time left of 14 hours.

Edit: Finished in 6 hours 13 minutes - Valid

Cheers
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Sgt. Joe
*Minnesota Crunchers*
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[Edit 1 times, last edit by Sgt.Joe at Apr 9, 2015 12:25:34 AM]
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Speedy51
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Re: Beta Test - Uncovering Genome Mysteries - v7.28 - Apr 7, 2015 [ Issues Thread ]

By the meaning of "improved performance" are you meaning that we will get more science done in the same amount of time or will the time it takes to write checkpoints be shortened?
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