Index  | Recent Threads  | Unanswered Threads  | Who's Active  | Guidelines  | Search
 
World Community Grid Forums
  Category: Active Research
  Forum: Mapping Cancer Markers Forum
  Thread: Error

Quick Go »
No member browsing this thread
Thread Status: Active
Total posts in this thread: 6
[ Jump to Last Post ]
Post new Thread
Author
Previous Thread This topic has been viewed 956 times and has 5 replies Next Thread
zdnko
Senior Cruncher
Joined: Dec 1, 2005
Post Count: 219
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Error
I got Error in 3 wu:
 <core_client_version>7.14.2</core_client_version>
 <![CDATA[
 <message>
 WU download error: couldn't get input files:
 <file_xfer_error>
 <file_name>mcm1.dataset-sarc1.txt</file_name>
 <error_code>-200 (wrong size)</error_code>
 </file_xfer_error>
 </message>
 ]]>
[Apr 3, 2023 6:19:33 AM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
Master Cruncher
The Netherlands
Joined: Apr 3, 2009
Post Count: 1983
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: Error downloading
All 5 tasks in this workunit failed their MD5 checksum:

workunit 274114918
OPN1_0129069_02121_0  MSWin 10      Error  2023-04-02T21:34:52  2023-04-02T22:35:20
OPN1_0129069_02121_1  Linux Ubuntu  Error  2023-04-03T00:25:13  2023-04-03T02:57:17
OPN1_0129069_02121_2  Linuxmint     Error  2023-04-03T01:47:26  2023-04-03T02:02:03
OPN1_0129069_02121_3  Fedora Linux  Error  2023-04-03T02:04:38  2023-04-03T02:06:41
OPN1_0129069_02121_4  Fedora Linux  Error  2023-04-03T02:09:13  2023-04-03T02:11:21
---------------------------------------------------------------------------------------------------------------------------------------
Details:
OPN1_0129069_02121_0  MSWin 10      Error  2023-04-02T21:34:52  2023-04-02T22:35:20
	Logfile:
	<core_client_version>7.16.11</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>0ddb7f206b8f33ccfef2b8fbc5ae5a56.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPN1_0129069_02121_1  Linux Ubuntu  Error  2023-04-03T00:25:13  2023-04-03T02:57:17
	Logfile:
	<core_client_version>7.16.6</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>0ddb7f206b8f33ccfef2b8fbc5ae5a56.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPN1_0129069_02121_2  Linuxmint     Error  2023-04-03T01:47:26  2023-04-03T02:02:03
	Logfile:
	<core_client_version>7.20.5</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>0ddb7f206b8f33ccfef2b8fbc5ae5a56.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPN1_0129069_02121_3  Fedora Linux  Error  2023-04-03T02:04:38  2023-04-03T02:06:41
	Logfile:
	<core_client_version>7.20.2</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>0ddb7f206b8f33ccfef2b8fbc5ae5a56.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPN1_0129069_02121_4  Fedora Linux  Error  2023-04-03T02:09:13  2023-04-03T02:11:21
	Logfile:
	<core_client_version>7.20.2</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>0ddb7f206b8f33ccfef2b8fbc5ae5a56.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>

and this month in this one, too:

workunit 274020821
OPNG_0172125_00038_0  MSWin 10      Detached   2023-03-01T02:21:18  2023-04-02T22:13:58
OPNG_0172125_00038_1  Fedora Linux  Error      2023-04-03T00:50:19  2023-04-03T00:53:02
OPNG_0172125_00038_2  MSWin 10      Error      2023-04-03T01:36:23  2023-04-03T01:38:28
OPNG_0172125_00038_3  MSWin 10      Error      2023-04-03T01:36:25  2023-04-03T01:39:00
OPNG_0172125_00038_4  MSWin 10      Error      2023-04-03T01:43:26  2023-04-03T01:46:20
OPNG_0172125_00038_5  MSWin 10      Error      2023-04-03T01:43:28  2023-04-03T01:45:31
---------------------------------------------------------------------------------------------------------------------------------------
Details:
OPNG_0172125_00038_0  MSWin 10      Detached   2023-03-01T02:21:18  2023-04-02T22:13:58
OPNG_0172125_00038_1  Fedora Linux  Error      2023-04-03T00:50:19  2023-04-03T00:53:02
	Logfile:
	<core_client_version>7.20.2</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>cd1bdb0602e40270d44ed9582426d6d6.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPNG_0172125_00038_2  MSWin 10      Error      2023-04-03T01:36:23  2023-04-03T01:38:28
	Logfile:
	<core_client_version>7.20.2</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>cd1bdb0602e40270d44ed9582426d6d6.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPNG_0172125_00038_3  MSWin 10      Error      2023-04-03T01:36:25  2023-04-03T01:39:00
	Logfile:
	<core_client_version>7.16.11</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>cd1bdb0602e40270d44ed9582426d6d6.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPNG_0172125_00038_4  MSWin 10      Error      2023-04-03T01:43:26  2023-04-03T01:46:20
	Logfile:
	<core_client_version>7.14.2</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>cd1bdb0602e40270d44ed9582426d6d6.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>
OPNG_0172125_00038_5  MSWin 10      Error      2023-04-03T01:43:28  2023-04-03T01:45:31
	Logfile:
	<core_client_version>7.16.11</core_client_version>
	<message>
	WU download error: couldn't get input files:
	<file_xfer_error>
	  <file_name>cd1bdb0602e40270d44ed9582426d6d6.pdbqt</file_name>
	  <error_code>-119 (md5 checksum failed for file)</error_code>
	  <error_message>MD5 check failed</error_message>
	</file_xfer_error>
	</message>

----------------------------------------
[Edit 1 times, last edit by adriverhoef at Apr 3, 2023 9:46:02 AM]
[Apr 3, 2023 9:20:41 AM]   Link   Report threatening or abusive post: please login first  Go to top 
zdnko
Senior Cruncher
Joined: Dec 1, 2005
Post Count: 219
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: Error downloading
@adriverhoef open a thread in Forum: OpenPandemics - COVID-19 Project instead to write here in Mapping Cancer Markers Forum.

tnx
[Apr 3, 2023 3:22:00 PM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
Master Cruncher
The Netherlands
Joined: Apr 3, 2009
Post Count: 1983
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: Error downloading
O sorry, when I saw the post I didn't consider it as being related to a certain project. See e.g. post 677165 in the News forum, where alanb1951 tells us: "I am getting a lot of retries for MCM1 because the initial tasks have been getting wrong size errors; I also get occasional retries for OPN1/OPNG for the same reason." So that was my reasoning.
[Apr 3, 2023 5:06:29 PM]   Link   Report threatening or abusive post: please login first  Go to top 
adriverhoef
Master Cruncher
The Netherlands
Joined: Apr 3, 2009
Post Count: 1983
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: Error downloading
Noticed this error in one of my MCM1-tasks:

workunit 272594224
MCM1_0197181_9520_0  Fedora Linux  Error  2023-02-27T23:19:22  2023-04-02T22:34:09    1.76/1.78      91.2/0.0
MCM1_0197181_9520_1  Linuxmint     P.Ver  2023-02-27T23:19:23  2023-04-02T22:01:11    1.74/1.75      66.3/0.0
MCM1_0197181_9520_2  CentOS Linux  InPrg  2023-04-06T21:58:25  2023-04-09T21:58:25    0.00/0.00       0.0/0.0


No significant difference in Error Log outputs from _0 and _1:
Details:
MCM1_0197181_9520_0  Fedora Linux  Error  2023-02-27T23:19:22  2023-04-02T22:34:09    1.76/1.78      91.2/0.0
	Logfile:
	<core_client_version>7.20.2</core_client_version>
	<stderr_txt>
	Commandline =  ../../projects/www.worldcommunitygrid.org/wcgrid_mcm1_map_7.61_x86_64-pc-linux-gnu -SettingsFile MCM1_0197181_9520.txt -DatabaseFile dataset-sarc1.txt
	Settings File 
	DateOfDesign = 20200218
	Designer = Krembil/cubes
	WorkOrderID = 0197181_9520
	DatasetID = sarc1
	RSeed = 368539521
	StartingGeneSignatureAlgorithm = randomFixedLengthSearch
	RunPermutationAlgorithm = 0
	FitnessFn = 0
	NumberOfGenesInStartingSignature = 20
	NumberOfGenesInSignatureMin = 20
	NumberOfGenesInSignatureMax = 20
	SearchAlgorithmNumberToCreate = 34506
	PositiveClasses = 5 6
	MinFitness = 0.785
	VMethod = LOO
	SvmArgs = "-v 0 -t 0 -c 1"
	SvmLearnLimit = 250000
	
	
	
	[05:47:55] Initializing
	[05:47:58] Running
	[05:47:59] EvaluateFitnessOfStartingGeneSignatures 34506
	[07:34:27] Writing final output
	[07:34:27] Closing Output Stream
	[07:34:27] Cleaning up
	Result.out = 22299.000000
	Run complete, CPU time: 6348.806284 
	07:34:27 (3516237): called boinc_finish(0)
	
	</stderr_txt>
MCM1_0197181_9520_1  Linuxmint     P.Ver  2023-02-27T23:19:23  2023-04-02T22:01:11    1.74/1.75      66.3/0.0
	Logfile:
	<core_client_version>7.16.6</core_client_version>
	<stderr_txt>
	Commandline =  ../../projects/www.worldcommunitygrid.org/wcgrid_mcm1_map_7.61_x86_64-pc-linux-gnu -SettingsFile MCM1_0197181_9520.txt -DatabaseFile dataset-sarc1.txt
	Settings File 
	DateOfDesign = 20200218
	Designer = Krembil/cubes
	WorkOrderID = 0197181_9520
	DatasetID = sarc1
	RSeed = 368539521
	StartingGeneSignatureAlgorithm = randomFixedLengthSearch
	RunPermutationAlgorithm = 0
	FitnessFn = 0
	NumberOfGenesInStartingSignature = 20
	NumberOfGenesInSignatureMin = 20
	NumberOfGenesInSignatureMax = 20
	SearchAlgorithmNumberToCreate = 34506
	PositiveClasses = 5 6
	MinFitness = 0.785
	VMethod = LOO
	SvmArgs = "-v 0 -t 0 -c 1"
	SvmLearnLimit = 250000
	
	
	
	[01:28:36] Initializing
	[01:28:39] Running
	[01:28:40] EvaluateFitnessOfStartingGeneSignatures 34506
	[03:13:25] Writing final output
	[03:13:25] Closing Output Stream
	[03:13:25] Cleaning up
	Result.out = 22299.000000
	Run complete, CPU time: 6272.613031 
	03:13:25 (749294): called boinc_finish(0)
	
	</stderr_txt>
MCM1_0197181_9520_2  CentOS Linux  InPrg  2023-04-06T21:58:25  2023-04-09T21:58:25    0.00/0.00       0.0/0.0
[Apr 6, 2023 11:24:41 PM]   Link   Report threatening or abusive post: please login first  Go to top 
alanb1951
Veteran Cruncher
Joined: Jan 20, 2006
Post Count: 738
Status: Offline
Project Badges:
Reply to this Post  Reply with Quote 
Re: Error downloading
Adri,

I used to see that fairly often amongst MCM1 wingmen -- as with several other "unusual" error returns, the majority of these errors would be from a very small subset of systems, typically all running similar O/S versions...

Since the restart, however, I've already noticed this behaviour from a handful of different systems with no obvious similarities. (It's a pity we can't find out what sort of CPU those systems have...)

As I've never seen an MCM1 work unit fail completely because of this behaviour I suspect we'll have to just regard it as a curiosity -- since it doesn't appear to interfere with overall result collection, I doubt we'll ever be told why it happens :-)

Cheers - Al.

P.S. This may not be about download errors, but at least it's in the right forum :-) :-)
[Apr 7, 2023 3:56:03 AM]   Link   Report threatening or abusive post: please login first  Go to top 
[ Jump to Last Post ]
Post new Thread