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World Community Grid Forums
Category: Beta Testing
Forum: Beta Test Support Forum
Thread: HPF2 on Linux / BOINC |
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Thread Status: Active Total posts in this thread: 9
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hello,
I'm noticing odd behavior on an HPF2 5.14 work unit. A lot of text is outputting to the shell running BOINC. The lines alternate [INFO] pct=0.nnn (where n is a number incrementing by 1 for each line, currnetly up to about 0.70) [DEBUG] getPCTcomplete(): _totalattempts: ## _maxattempts:## (more text I did not copy, ## is a number) This is running on Fedora Core 5 Linux, fully patched as of last Saturday, the latest version of BOINC, AMD Athlon XP2200+. Thank you. |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Hi again. I switched to my Linux bot. Let me try to get a screen capture...
~~~~~~~~~ [INFO] pct=0.27 [DEBUG] getPctComplete(): _totalAttempts: 2 _maxAttempts: 18 _stage: 2 _totalFACycles: 342 _completeFACycles: 338 [INFO] pct=0.27 [DEBUG] getPctComplete(): _totalAttempts: 2 _maxAttempts: 18 _stage: 2 _totalFACycles: 342 _completeFACycles: 339 [INFO] pct=0.27 [DEBUG] getPctComplete(): _totalAttempts: 2 _maxAttempts: 18 _stage: 2 _totalFACycles: 342 _completeFACycles: 340 [INFO] pct=0.271 [DEBUG] getPctComplete(): _totalAttempts: 2 _maxAttempts: 18 _stage: 2 _totalFACycles: 342 _completeFACycles: 341 [INFO] pct=0.271 [DEBUG] getPctComplete(): _totalAttempts: 2 _maxAttempts: 18 _stage: 2 _totalFACycles: 342 _completeFACycles: 342 [INFO] pct=0.271 --------------------------------------------------- shearmin trials: 131 accepts: 104 %: 79.3893 repack trials: 23 accepts: 16 %: 69.5652 smwblmin trials: 131 accepts: 43 %: 32.8244 smallmin trials: 352 accepts: 80 %: 22.7273 crankmin trials: 131 accepts: 5 %: 3.81679 wobblemin trials: 131 accepts: 0 %: 0 final score: -186.606293 --------------------------------------------------- [INFO] Saving random numbers. [INFO] Saving state succeeded! [00:32:24] [INFO] Checkpoint complete. [DEBUG] getPctComplete(): _totalAttempts: 3 _maxAttempts: 18 _stage: 0 _totalFACycles: 0 _completeFACycles: 0 [INFO] pct=0.333 [DEBUG] getPctComplete(): _totalAttempts: 3 _maxAttempts: 18 _stage: 0 _totalFACycles: 0 _completeFACycles: 0 [INFO] pct=0.333 NEXT STRUCTURE: ./00125za290004.pdb [INFO] run_job - in while loop: totalAttempts: 3 attemptsThisDecoy: 0 no need to set quench temp starting fragment insertions... Starting score3 moves... [DEBUG] getPctComplete(): _totalAttempts: 3 _maxAttempts: 18 _stage: 2 _totalFACycles: 0 _completeFACycles: 0 [INFO] pct=0.338 [T/F OPT]Default FALSE value for [-minimize_exclude_helix] [T/F OPT]Default FALSE value for [-minimize_exclude_strand] [DIAG] CYCLES::number is 1 x total_residue: 131 [DIAG]: total iterations: 342 (lj_ramp_cycles: 8, cycles: 131, final_cycles: 131 initializing full atom coordinates starting score 2592.00708 rms 0 ~~~ Thank you. |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Forgot to mention (sorry):
Boinc is run from a bash shell, "./run_client &". Output from BOINC is not re-directed, so all output goes to the shell. |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Well, it is a beta. And given the past troubles with HPF2, it's not surprising they have some extra debug info in the production build (at least for the beta).
I'll remind the techs to use stderr, not constant file descriptors! |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
..., it's not surprising they have some extra debug info in the production build (at least for the beta).....! Yup! I just did two WUs. I believe they both were HPF P2 but sure of only one. Processing ran for about four and a half hours each. Looks like we're getting closer to HPF on BOINC soon. Seems like the staff is putting in sweat hours. :>) BETA_ za292_ 00011 Inconclusive all machines This was the first one BETA_ za292_ 00017 same as above |
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Alther
Former World Community Grid Tech United States of America Joined: Sep 30, 2004 Post Count: 414 Status: Offline Project Badges: 
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Hello, I'm noticing odd behavior on an HPF2 5.14 work unit. A lot of text is outputting to the shell running BOINC. The lines alternate [INFO] pct=0.nnn (where n is a number incrementing by 1 for each line, currnetly up to about 0.70) [DEBUG] getPCTcomplete(): _totalattempts: ## _maxattempts:## (more text I did not copy, ## is a number) This is running on Fedora Core 5 Linux, fully patched as of last Saturday, the latest version of BOINC, AMD Athlon XP2200+. Thank you. This is nothing to worry about. I simply forgot to remove that debug line prior to doing the build. The debug lines will be removed from the next build.
Rick Alther
Former World Community Grid Developer |
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D_T_G
Advanced Cruncher Poland Joined: Jan 25, 2007 Post Count: 56 Status: Offline Project Badges: 
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Hi, I have just got an error with BETA_za293_00031_13 on i686-pc-linux-gnu(opensuse 10.2)/boinc 5.8.11 (Computer ID: 107707)
----------------------------------------boinc messages: World Community Grid, 15/02/2007 14:54:44, Deferring communication for 1 min 0 sec World Community Grid, 15/02/2007 14:54:44, Reason: Unrecoverable error for result BETA_za293_00031_13 (process got signal 11) World Community Grid, 15/02/2007 14:54:44, Computation for task BETA_za293_00031_13 finished World Community Grid, 15/02/2007 14:54:44, Output file BETA_za293_00031_13_0 for task BETA_za293_00031_13 absent World Community Grid, 15/02/2007 14:54:44, Starting BETA_za293_00041_0 World Community Grid, 15/02/2007 14:54:44, Starting task BETA_za293_00041_0 using beta version 510 World Community Grid, 15/02/2007 14:55:48, Sending scheduler request: To fetch work World Community Grid, 15/02/2007 14:55:48, Requesting 4202 seconds of new work, and reporting 2 completed tasks Result status: <core_client_version>5.8.11</core_client_version> <![CDATA[ <message> process got signal 11 </message> <stderr_txt> SIGSEGV: segmentation violationwcg_beta_rosetta_5.10_i686-pc-linux-gnu: freeglut_main.c:1069: glutMainLoop: Assertion `fgState.Initialised' failed. Caught SIGABRT in graphics thread Stack trace (17 frames): wcg_beta_rosetta_5.10_i686-pc-linux-gnu[0x88f32a5] [0xffffe420] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z18are_they_neighborsiiN9ObjexxFCL9FArray2DaIfEES1_RfRb+0x32d)[0x85a95fd] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z18make_neighbor_infoRKN9ObjexxFCL9FArray1DBIiEEiRKNS_9FArray3DBIfEERNS_9FArray2DBIbEERS1_+0x2a 8)[0x8594568] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z15fullatom_energyRN9ObjexxFCL9FArray1DBIiEES2_RNS_9FArray3DBIfEEib+0x8e1)[0x83a1a31] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z8scorefxnv+0xdd7)[0x8778d77] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z23monte_carlo_accept_bestv+0x920)[0x8542df0] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z11monte_carloi+0x18a)[0x8545fea] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z20main_shear_min_trialiPFfvEiRKSs+0x30c)[0x881dc6c] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z14fullatom_relaxv+0x12e9)[0x86f6329] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z15relax_structurev+0x39)[0x86f8379] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z7abrelaxi+0x76a)[0x8143daa] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_ZN15job_distributor7run_jobEv+0x112)[0x8421502] wcg_beta_rosetta_5.10_i686-pc-linux-gnu(_Z12main_rosettav+0x26f)[0x84e99cf] ../../projects/www.worldcommunitygrid.org/wcg_beta_rosetta_5.10_i686-pc-linux-gnu.so(_Z6foobarPv+0x23)[0xb746fb13] /lib/libpthread.so.0[0xb7ee0112] /lib/libc.so.6(clone+0x5e)[0xb7e422ee] Exiting... </stderr_txt> ]]> I use run_client & kboincmgr 0.2.4 - I clicked "Show graphics for it" and later "close graphics" and from 60% it changed to 100% & status: ready to report. I have now launched standard boincmgr and checked another work unit (quoted starting above: BETA_za293_00041_0) under boincmgr - the same: World Community Grid, 15/02/2007 15:06:41, Reason: Unrecoverable error for result BETA_za293_00041_0 (process got signal 11) World Community Grid, 15/02/2007 15:06:41, Computation for task BETA_za293_00041_0 finished World Community Grid, 15/02/2007 15:06:41, Output file BETA_za293_00041_0_0 for task BETA_za293_00041_0 absent ================= EDIT: We have suspended this beta test. There was a 10% error rate that was largely caused by the graphics. We will resume the beta test when this problem has been addressed. Oh, I see... ---------------------------------------- [Edit 2 times, last edit by D_T_G at Feb 15, 2007 2:26:18 PM] |
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D_T_G
Advanced Cruncher Poland Joined: Jan 25, 2007 Post Count: 56 Status: Offline Project Badges:
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Can you let us on any details about adressing the bug discovered during last hpf2 beta on linux?
----------------------------------------Regards, D_T_G. ---------------------------------------- [Edit 1 times, last edit by D_T_G at Mar 15, 2007 9:43:05 PM] |
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knreed
Former World Community Grid Tech Joined: Nov 8, 2004 Post Count: 4504 Status: Offline Project Badges:
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Actually we will be resuming this beta test shortly (probably Monday). The issue with the graphics is proving to be quite challenging so we will be resuming testing with a version of HPF2 on Linux that does not include graphics. This will allow members to process work for HPF2 on Linux while we try to resolve the issue with the graphics.
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