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World Community Grid Forums
Category: Beta Testing
Forum: Beta Test Support Forum
Thread: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ] |
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Thread Status: Active Total posts in this thread: 120
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
Wonder what it is the Shrubs manages to cause them to go invalid as whatever I did, 100% valid. Is there a processor homogeneity thing in play? Hopefully the 100K+ test results allow that to be statistically exposed [would have preferred a shorter deadline to auto-force them head of queue]. Still receiving sporadic [original] Beta now of a batch 0000634... a sample of the new comp [courtesy WCGDAWS]:
----------------------------------------Name DeviceName Status LastUpdate Returned CPUTime Claimed Granted Elapsed PPH ProjectName OSName CPUModel Speed Sent ElapsedTime BETA_ MCM1_ 0000643_ 8593_ 0-- 2610544 Valid 11-12-2013 9:17:00 11-12-2013 5:26:45 2,04 95,5 87,1 6,54 42,70 BETA 10-12-2013 22:54:32 2,05 BETA_ MCM1_ 0000643_ 8253_ 0-- 2610544 Valid 11-12-2013 9:17:00 11-12-2013 4:41:04 2,04 61,9 64,8 5,83 31,76 BETA 10-12-2013 22:51:22 2,05 BETA_ MCM1_ 0000643_ 7871_ 1-- 2610544 Valid 11-12-2013 9:17:00 11-12-2013 4:41:04 2,04 61,7 50,1 5,88 24,56 BETA 10-12-2013 22:48:13 2,04 BETA_ MCM1_ 0000643_ 7621_ 0-- 2610544 Pending Validation 11-12-2013 9:17:00 11-12-2013 4:37:53 2,03 61,6 5,88 BETA 10-12-2013 22:45:04 2,04 P.S. Per BOINCTasks, running MCM on 8 cores, >= 99.8% efficient and well behaved on Peak RAM/VM usage... 100MB / 60MBas highest values, with 7.6GB usable: World Community Grid 7.27 beta17 BETA_MCM1_0000643_6063_1 01:49:47 (01:49:33) 11-12-2013 11:23 11-12-2013 11:24 99.787 Reported: OK 99.91 MB 41.69 MB World Community Grid 7.27 beta17 BETA_MCM1_0000643_3538_1 01:54:52 (01:54:39) 11-12-2013 11:03 11-12-2013 11:05 99.811 Reported: OK 99.64 MB 60.09 MB World Community Grid 7.27 beta17 BETA_MCM1_0000643_2677_0 01:56:38 (01:56:25) 11-12-2013 10:59 11-12-2013 11:01 99.814 Reported: OK 100.01 MB 42.71 MB World Community Grid 7.27 beta17 BETA_MCM1_0000643_8599_0 01:57:03 (01:56:52) 11-12-2013 10:58 11-12-2013 10:58 99.843 Reported: OK * 99.86 MB 58.67 MB [Edit 2 times, last edit by Former Member at Dec 11, 2013 11:34:00 AM] |
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widdershins
Veteran Cruncher Scotland Joined: Apr 30, 2007 Post Count: 674 Status: Offline Project Badges: 
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I've had a couple of invalids so far. I've got another few in progress that I've stopped and restarted also, so we'll see how they fare also.
Result Name: BETA_ MCM1_ 0000144_ 7074_ 1-- <core_client_version>6.10.17</core_client_version> <![CDATA[ <stderr_txt> Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_i686-pc-linux-gnu -SettingsFile MCM1_0000144_7074.txt -DatabaseFile dataset-17_72_SDG_v1.txt Settings File DateOfDesign = 11/08/2013 Designer = PMCC_OCI WorkOrderID = 0000144_7074 DatasetID = 17_72_SDG_v1 NumberOfGenesInStartingSignature = 16 NumberOfGenesInSignatureMin = 10 NumberOfGenesInSignatureMax = 20 GroupVectorValues = {A}{B}{C}{D}{E}{F} ExplicitStartingGeneSignatures = A B D F StartingGeneSignatureAlgorithm = randomFixedLengthSearch SearchAlgorithmNumberToCreate = 7738 SearchAlgorithmSequentialStartPosition = 5 RunPermutationAlgorithm = 0 PermutationGroups = A PermutationGroupsForReplacement = G PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy PermutationsNumIterations = 7738 OptimizationAlgorithmFrequency = 0 0 1 FBeta = 1.5 SimAnnealIMax = 20000 SimAnnealAlpha = 0.9996 NReps = 10 TrainFrac = 0.7 NFolds = 10 VMethod = NFCV ModelType = SVM FitnessFn = 0 MinFitness = -1 SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0" SvmLearnLimit = 500000 RSeed = 347074 [08:22:28] Initializing wcg_learn_limit = 500000 [08:22:34] Running [08:22:34] EvaluateFitnessOfStartingGeneSignatures 7738 11:26:44 (14838): No heartbeat from client for 30 sec - exiting 11:26:44 (14838): timer handler: client dead, exiting Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_i686-pc-linux-gnu -SettingsFile MCM1_0000144_7074.txt -DatabaseFile dataset-17_72_SDG_v1.txt [11:26:55] Initializing wcg_learn_limit = 500000 [11:27:01] Running [11:27:02] EvaluateFitnessOfStartingGeneSignatures 7738 [13:56:34] Writing final output [13:56:34] Closing Output Stream [13:56:34] Cleaning up Result.out = 1604137.000000 Run complete, CPU time: 17739.130000 13:56:34 (15445): called boinc_finish </stderr_txt> ]]> Result Name: BETA_ MCM1_ 0000144_ 9139_ 0-- <core_client_version>6.10.17</core_client_version> <![CDATA[ <stderr_txt> Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_x86_64-pc-linux-gnu -SettingsFile MCM1_0000144_9139.txt -DatabaseFile dataset-17_72_SDG_v1.txt Settings File DateOfDesign = 11/08/2013 Designer = PMCC_OCI WorkOrderID = 0000144_9139 DatasetID = 17_72_SDG_v1 NumberOfGenesInStartingSignature = 16 NumberOfGenesInSignatureMin = 10 NumberOfGenesInSignatureMax = 20 GroupVectorValues = {A}{B}{C}{D}{E}{F} ExplicitStartingGeneSignatures = A B D F StartingGeneSignatureAlgorithm = randomFixedLengthSearch SearchAlgorithmNumberToCreate = 7738 SearchAlgorithmSequentialStartPosition = 5 RunPermutationAlgorithm = 0 PermutationGroups = A PermutationGroupsForReplacement = G PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy PermutationsNumIterations = 7738 OptimizationAlgorithmFrequency = 0 0 1 FBeta = 1.5 SimAnnealIMax = 20000 SimAnnealAlpha = 0.9996 NReps = 10 TrainFrac = 0.7 NFolds = 10 VMethod = NFCV ModelType = SVM FitnessFn = 0 MinFitness = -1 SvmArgs = "-v 0 -c 0.01 -t 1 -d 3 -r 0" SvmLearnLimit = 500000 RSeed = 349139 [08:23:29] Initializing wcg_learn_limit = 500000 [08:23:34] Running [08:23:34] EvaluateFitnessOfStartingGeneSignatures 7738 11:26:43 (14847): No heartbeat from client for 30 sec - exiting 11:26:43 (14847): timer handler: client dead, exiting Commandline = ../../projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_x86_64-pc-linux-gnu -SettingsFile MCM1_0000144_9139.txt -DatabaseFile dataset-17_72_SDG_v1.txt [11:26:56] Initializing wcg_learn_limit = 500000 [11:27:00] Running [11:27:00] EvaluateFitnessOfStartingGeneSignatures 7738 [13:42:02] Writing final output [13:42:02] Closing Output Stream [13:42:02] Cleaning up Result.out = 1603614.000000 Run complete, CPU time: 16962.220000 13:42:02 (15447): called boinc_finish </stderr_txt> ]]> |
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Sgt.Joe
Ace Cruncher USA Joined: Jul 4, 2006 Post Count: 7697 Status: Offline Project Badges: 
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I have had three go invalid - 2 on a machine with a restart and one on a machine with no restart.
----------------------------------------BETA_ MCM1_ 0000144_ 0242_ 0-- ******** Invalid 12/10/13 01:39:30 12/10/13 21:40:40 3.56 / 3.56 69.8 / 69.8 BETA_ MCM1_ 0000144_ 5519_ 0-- ******** Invalid 12/10/13 01:12:01 12/10/13 21:30:44 3.55 / 3.55 69.6 / 62.9 BETA_ MCM1_ 0000144_ 3038_ 0-- ******** Invalid 12/10/13 00:02:19 12/10/13 18:40:06 3.48 / 3.48 63.5 / 63.5 The first two are from a Q6600 running Vista Business and the third one is from a Core2Duo running Linux Mint 32 bit. The Vista Machine had the restart. Cheers
Sgt. Joe
*Minnesota Crunchers* |
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ccandido
Senior Cruncher Joined: Jun 22, 2011 Post Count: 182 Status: Offline Project Badges:
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looks like no more wu available!?
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deltavee
Ace Cruncher Texas Hill Country Joined: Nov 17, 2004 Post Count: 4891 Status: Offline Project Badges: 
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It seems there are just resends left.
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CandymanWCG
Senior Cruncher Romania Joined: Dec 20, 2010 Post Count: 421 Status: Offline Project Badges: 
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No more for quite some time now.
----------------------------------------Knowledge is limited. Imagination encircles the world! - Albert Einstein   |
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mwgiii
Advanced Cruncher United States Joined: Aug 17, 2006 Post Count: 131 Status: Offline Project Badges: 
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It's strange that my only PV are the WUs run on my MacBook Air 1st gen.
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MStenholm
Advanced Cruncher Denmark Joined: Jan 7, 2010 Post Count: 97 Status: Offline Project Badges:
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I think that it is more strange that most off my betas, despite have a shorter deadline than my buffer, have not started. I have between 1.5-2.5 day buffer on my rigs.
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PMH_UK
Veteran Cruncher UK Joined: Apr 26, 2007 Post Count: 774 Status: Offline Project Badges: 
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To persuade BOINC to start shorter deadline tasks first, increase the
----------------------------------------Switch between applications every: x minutes value to a day or more, exact value depends on cache size and deadlines. I often have 4000 but this may cause panic in older BOINC versions and did not appear to work in 7.0.27 (waiting for stable release approved by WCG before upgrading). If too high older BOINC can panic by keep starting more tasks which may fill memory. Once increased short deadline tasks like betas and re-sends will jump the queue. Paul.
Paul.
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MStenholm
Advanced Cruncher Denmark Joined: Jan 7, 2010 Post Count: 97 Status: Offline Project Badges:
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To persuade BOINC to start shorter deadline tasks first, increase the Switch between applications every: x minutes value to a day or more, exact value depends on cache size and deadlines. I often have 4000 but this may cause panic in older BOINC versions and did not appear to work in 7.0.27 (waiting for stable release approved by WCG before upgrading). If too high older BOINC can panic by keep starting more tasks which may fill memory. Once increased short deadline tasks like betas and re-sends will jump the queue. Paul. Thank you. I tried on one rig to change the default 120 min to 3000 min. Didn't do any difference, yet. Michael |
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