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DSL Freak
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

Is the Result.out = 1627661.000000 different to the two valid of that last result that went invalid for you?
Yes... Here's the status for that WU:

BETA_ MCM1_ 0000144_ 4956_ 3-- (Valid) Result.out = 1627372.000000

BETA_ MCM1_ 0000144_ 4956_ 2-- (Invalid) Result.out = 1627661.000000 <--- Mine

BETA_ MCM1_ 0000144_ 4956_ 0-- (Invalid) Result.out = 1627434.000000

BETA_ MCM1_ 0000144_ 4956_ 1-- (Valid) Result.out = 1627372.000000
----------------------------------------
Crunchin' for a cure!
[Dec 11, 2013 8:16:43 PM]   Link   Report threatening or abusive post: please login first  Go to top 
slakin
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I successfully processed a number of WU's that had been restarted, some multiple times. I did have 3 WU's that were deemed INVALID, the only thing that jumped out is that they were all from the BETA_MCM1_0000144 range ..jumped out as the others reported as invalid in this thread also seemed to be in that batch. The result out is different, appears that my wingmen did not do a restart. Let me know if there is any data you would like me to supply.
[Dec 11, 2013 9:25:45 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

Here's an interesting one: BETA_MCM1_0000144_4267

Suffix _0 restarted 2 times and gave Result.out = 1627470.000000
Suffix _1 restarted 2 times and gave Result.out = 1627033.000000
Suffix _2 restarted 0 times and gave Result.out = 1627011.000000
Suffix _3 restarted 2 times and gave Result.out = 1627263.000000
Suffix _4 is still out there.

Nothing consistent here then!
[Dec 11, 2013 10:27:29 PM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

We've seen those in production [Sgt.Joe had one] All 5 copies a different RO value.
[Dec 11, 2013 10:40:56 PM]   Link   Report threatening or abusive post: please login first  Go to top 
yoro42
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I have two Beta 7.27 WUs running on two PCs. Both have been running for over 22 hours and both have a 24 hour deadline. Last night and again at noon today the estimated completion times were easily possible. Now however it looks unlikely. Time left values do not seem to be going down as one would expect. I'll post when they finish.

Detail Below:
WCGDAWS 1.3.3.0
Device Project Name Name Status Sent LastUpdate Returned OSName CPU Model ElapsedTime
Thelonious BETA BETA_ MCM1_ 0000218_ 8668_ 3-- In Progress 12/11/2013 3:29:43 AM 12/11/2013 5:15:00 PM 12/12/2013 3:29:43 AM W7U XPS 8300
Jamal BETA BETA_ MCM1_ 0000218_ 9618_ 3-- In Progress 12/11/2013 3:35:18 AM 12/11/2013 5:15:00 PM 12/12/2013 3:35:18 AM XPPro Dimension 8400

BoincTasks 1.58
Application Name Status Rcvd Elapsed Time Time Left Prog % CPU % CK Point Deadline Memory Virtual
Thelonious 7.27 beta17 BETA_MCM1_0000218_8668_3 Running High P. 12/10/2013 8:29:50 PM 20:30:26 (18:10:59) 02:10:28 87.94 88.666 [3] 00:06:24 12/11/2013 8:29:43 PM 30.96 MB 90.21 MB
Jamal 7.27 beta17 BETA_MCM1_0000218_9618_3 Running High P. 12/10/2013 8:35:14 PM 20:56:32 (20:22:47) 05:13:47 51.64 97.315 [3] 00:03:10 12/11/2013 8:35:18 PM 43.38 MB 81.22 MB
----------------------------------------

[Dec 12, 2013 2:25:41 AM]   Link   Report threatening or abusive post: please login first  Go to top 
gomeyer
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I forced 32 WUs from this latest BETA release to do a restart. Of those 32, 3 have been marked invalid and 3 more are still PVer and may well also be invalid.

EDIT: Don't know if it matters, but those invalid/pver WUs were from both Window 32 and Linux 64 machines.
----------------------------------------

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[Edit 1 times, last edit by gomeyer at Dec 12, 2013 4:17:29 AM]
[Dec 12, 2013 4:15:02 AM]   Link   Report threatening or abusive post: please login first  Go to top 
yoro42
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

I have two Beta 7.27 WUs running on two PCs. Both have been running for over 22 hours and both have a 24 hour deadline. Last night and again at noon today the estimated completion times were easily possible. Now however it looks unlikely. Time left values do not seem to be going down as one would expect. I'll post when they finish.

Detail Below:
WCGDAWS 1.3.3.0
Device Project Name Name Status Sent LastUpdate Returned OSName CPU Model ElapsedTime
Thelonious BETA BETA_ MCM1_ 0000218_ 8668_ 3-- In Progress 12/11/2013 3:29:43 AM 12/11/2013 5:15:00 PM 12/12/2013 3:29:43 AM W7U XPS 8300


BoincTasks 1.58
Application Name Status Rcvd Elapsed Time Time Left Prog % CPU % CK Point Deadline Memory Virtual
Thelonious 7.27 beta17 BETA_MCM1_0000218_8668_3 Running High P. 12/10/2013 8:29:50 PM 20:30:26 (18:10:59) 02:10:28 87.94 88.666 [3] 00:06:24 12/11/2013 8:29:43 PM 30.96 MB 90.21 MB


The log of first to finish follows and the one still running shows 5:57:53 to go.
Result Log

Result Name: BETA_ MCM1_ 0000218_ 8668_ 3--
<core_client_version>7.2.33</core_client_version>
<![CDATA[
<stderr_txt>
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000218_8668.txt -DatabaseFile dataset-17_72_SDG_v1.txt
Settings File
DateOfDesign = 11/08/2013
Designer = PMCC_OCI
WorkOrderID = 0000218_8668
DatasetID = 17_72_SDG_v1
NumberOfGenesInStartingSignature = 20
NumberOfGenesInSignatureMin = 10
NumberOfGenesInSignatureMax = 20
GroupVectorValues = {A}{B}{C}{D}{E}{F}
ExplicitStartingGeneSignatures = A B D F
StartingGeneSignatureAlgorithm = randomFixedLengthSearch
SearchAlgorithmNumberToCreate = 1
SearchAlgorithmSequentialStartPosition = 5
RunPermutationAlgorithm = 1
PermutationGroups = A
PermutationGroupsForReplacement = G
PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy
PermutationsNumIterations = 67911
OptimizationAlgorithmFrequency = 0 0 1
FBeta = 1.5
SimAnnealIMax = 20000
SimAnnealAlpha = 0.9996
NReps = 10
TrainFrac = 0.7
NFolds = 10
VMethod = LOO
ModelType = SVM
FitnessFn = 0
MinFitness = 0.61
SvmArgs = "-v 0 -c 0.1 -t 1 -d 2 -r 0"
SvmLearnLimit = 500000
RSeed = 538668


[20:29:53] Initializing
wcg_learn_limit = 500000
[20:29:59] Running
[20:29:59] EvaluateFitnessOfStartingGeneSignatures 1
[20:30:00]: Computing pass 0
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000218_8668.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[03:30:49] Initializing
wcg_learn_limit = 500000
[03:31:28] Running
[03:31:28] EvaluateFitnessOfStartingGeneSignatures 1
[03:31:29]: Computing pass 0
Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.27_windows_x86_64 -SettingsFile MCM1_0000218_8668.txt -DatabaseFile dataset-17_72_SDG_v1.txt
[11:12:53] Initializing
wcg_learn_limit = 500000
[11:13:19] Running
[11:13:19] EvaluateFitnessOfStartingGeneSignatures 1
[11:13:20]: Computing pass 0
[20:45:56] Exiting PermutateGeneSignature
[20:45:56] Writing final output
[20:45:56] Closing Output Stream
[20:45:56] Cleaning up
Result.out = 222.000000
Run complete, CPU time: 74693.509894
20:45:56 (6760): called boinc_finish

</stderr_txt>
]]>
----------------------------------------

[Dec 12, 2013 4:19:48 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Sgt.Joe
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

All of the WU in batches named 218 seem to be quite lengthy. I have three which will go probably 24 hrs or more, but they all seem to be progressing normally - the percentage done continues to increment.
Cheers
----------------------------------------
Sgt. Joe
*Minnesota Crunchers*
[Dec 12, 2013 4:43:25 AM]   Link   Report threatening or abusive post: please login first  Go to top 
armstrdj
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

We were able to track down a bug in the restart code that seems to be causing the majority of the invalids. We are currently running that fix in our alpha environment and would expect it to enter beta as early as tomorrow.

Thanks,
armstrdj
[Dec 12, 2013 4:45:53 AM]   Link   Report threatening or abusive post: please login first  Go to top 
CandymanWCG
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Re: Mapping Cancer Markers Beta Test - Version 7.27 [ Issues Thread ]

Many thanks for the update! Looking forward to the new Beta. We will make sure we will stress test those WUs. Hope this one nails it.

Cheers!
----------------------------------------
Knowledge is limited. Imagination encircles the world! - Albert Einstein



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