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uplinger
Former World Community Grid Tech Joined: May 23, 2005 Post Count: 3952 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Jm, can you post the stderr here? The percentage increases could have been because it was in a part of the application that could not allow for updates to fraction complete. Interesting that it was on the full percentages though.
As for length of the work units, these were test ones and BETA estimates are always way off even if I try :( This large set of work units had MANY types of workunits which does not help with sizing either. Thanks, -Uplinger |
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JmBoullier
Former Community Advisor Normandy - France Joined: Jan 26, 2007 Post Count: 3715 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Jm, can you post the stderr here? Here it is, with its associated Result Status line. No problem with different WU durations, I was only mentioning them as mere facts in case it could help. And every time I talk of estimated total durations I mean real-serious-human estimates, not the fancy-ridiculous-childish estimates computed by DrA's "smart" algorithm. ![]() BETA_ BETA_ 9999970_ 0476_ 1-- JmB-6600-Ub64 Pending Validation 26/02/14 05:56:00 26/02/14 10:24:53 1.76 / 1.78 27.4 / 0.0 Result Log Result Name: BETA_ BETA_ 9999970_ 0476_ 1-- <core_client_version>7.2.7</core_client_version> <![CDATA[ <stderr_txt> {A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{ A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A }{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A} ... *** shortened to keep the post short enough *** ... ExplicitStartingGeneSignatures = D E //Starting Gene Signature //Options are: explicitGeneSignatureSearch, explicitFrequencyRandomSearch, // randomFixedLengthSearch, randomSearch, sequentialSearch, StartingGeneSignatureAlgorithm = randomFixedLengthSearch //For random and random fixed length, explicit frequency search and explicit frequency //fixed search, define how many starting gene signatures to start with SearchAlgorithmNumberToCreate = 1 //Only for sequential search, define the starting position SearchAlgorithmSequentialStartPosition = 304 //Permutation Algorithm //Permutations can have two sets of groups, in most cases only one is used. //e.g. A user can define a group to permutate (group A) and another to //pull from RunPermutationAlgorithm = 1 PermutationGroups = F PermutationGroupsForReplacement = F //Options are: // insertOneGeneFromGroup, insertOneGeneRandomly, insertEnumerateFromGroup, insertGreedyRandomly // insertGreedyFromGroup, insertSimulatedAnnealingFromGroup, insertSimulatedAnnealingRandomly, // deleteOneGeneFromGroup, deleteOneGeneRandomly, deleteEnumerateFromGroup, deleteGreedyRandomly, // deleteGreedyFromGroup, deleteSimulatedAnnealingFromGroup, deleteSimulatedAnnealingRandomly, // replaceFromGroupToGroup, replaceFromRandomlyToRandomly, replaceFromRandomlyToRandomlyGreedy, // replaceFromRandomlyToRandomlySimulatedAnnealing, replaceFromRandomlyToGroup, // replaceFromRandomlyToGroupGreedy, replaceFromRandomlyToGroupSimulatedAnnealing, // replaceFromGroupToRandomly, runRandomGreedy, runRandomSimulatedAnnealing, PermutationAlgorithm = replaceFromRandomlyToRandomlyGreedy //Number of permutations to run PER starting gene signature PermutationsNumIterations = 100 //Insert Delete Replace OptimizationAlgorithmFrequency = 0 0 1 NReps = 10 // VMethod : string (CV) : validation method {LOO - leave-one-out validation, CV - cross-validation, OOB - "out of bag" validation, NFCV - N-fold CV} //VMethod = LOO //VMethod = CV //VMethod = OOB VMethod = NFCV ModelType = SVM SvmArgs = "-v 0 -c 0.1 -t 1 -d 4 -r 1 " MinFitness = -1 RSeed = 5002 SvmLearnLimit = 250000 [08:00:29] Initializing [08:00:32] Running [08:00:32] EvaluateFitnessOfStartingGeneSignatures 1 INFO: WcgLearnLimit(250000) reached. 1.6010120170067239 0.0160643694816827 INFO: WcgLearnLimit(250000) reached. 1.5909506812240579 0.1324036373030140 [08:01:23]: Computing pass 0 INFO: WcgLearnLimit(250000) reached. 1.5079339110216097 0.0285698829095509 INFO: WcgLearnLimit(250000) reached. 1.1835485626907030 0.6990818839840358 INFO: WcgLearnLimit(250000) reached. 0.8788766349289290 0.1662673666291994 INFO: WcgLearnLimit(250000) reached. 1.4006863939043797 0.0877988938518683 INFO: WcgLearnLimit(250000) reached. 0.4338224176754011 0.0129167985287495 INFO: WcgLearnLimit(250000) reached. 0.6009846607630607 0.0057879033774952 INFO: WcgLearnLimit(250000) reached. 0.2737196207199304 0.0114022287671105 INFO: WcgLearnLimit(250000) reached. 1.0603640642002574 0.1034979197465873 INFO: WcgLearnLimit(250000) reached. 1.1720460343385639 0.0010550046654316 INFO: WcgLearnLimit(250000) reached. 1.3743308812772739 0.1167968593135811 INFO: WcgLearnLimit(250000) reached. 1.7652385435966309 0.0127503800875957 INFO: WcgLearnLimit(250000) reached. 0.9359360172466040 0.3751339717327937 INFO: WcgLearnLimit(250000) reached. 0.3036501448068520 0.0191665714664850 INFO: WcgLearnLimit(250000) reached. 1.0222109506030392 0.0010347525658290 INFO: WcgLearnLimit(250000) reached. 1.7414016861339405 0.0443018683508853 INFO: WcgLearnLimit(250000) reached. 0.8973642246473901 0.0173853053292987 INFO: WcgLearnLimit(250000) reached. 1.5364974785948107 0.0109519376383105 INFO: WcgLearnLimit(250000) reached. 0.5750262792498688 0.0351036035860943 INFO: WcgLearnLimit(250000) reached. 0.9373486767144641 0.0120101479024015 INFO: WcgLearnLimit(250000) reached. 0.9285691468685400 0.1785323672447703 INFO: WcgLearnLimit(250000) reached. 0.8684761145668745 0.0032792220790725 INFO: WcgLearnLimit(250000) reached. 1.0832972700536629 0.0446349917638145 INFO: WcgLearnLimit(250000) reached. 0.4655490454961182 0.2820631263075484 INFO: WcgLearnLimit(250000) reached. 0.8652376281752368 0.0027157327876921 INFO: WcgLearnLimit(250000) reached. 0.9315738020886783 0.1641739348415285 INFO: WcgLearnLimit(250000) reached. 0.8212574574081373 0.0553695525231888 INFO: WcgLearnLimit(250000) reached. 1.3728237018003711 0.0055804769763199 INFO: WcgLearnLimit(250000) reached. 1.1718425155213481 0.0624291799199455 INFO: WcgLearnLimit(250000) reached. 1.7197414149086399 0.0657542596636631 INFO: WcgLearnLimit(250000) reached. 0.2918640534680890 0.0315810903048259 INFO: WcgLearnLimit(250000) reached. 0.6203915338192019 0.0160002176053240 INFO: WcgLearnLimit(250000) reached. 0.5821023026037437 0.0687805378966004 INFO: WcgLearnLimit(250000) reached. 0.6509102162090130 0.1411484930795268 INFO: WcgLearnLimit(250000) reached. 1.6337488219592586 0.3804094193473020 ... *** shortened to keep the post short enough *** ... INFO: WcgLearnLimit(250000) reached. 0.8838747420472828 0.1387978458565158 INFO: WcgLearnLimit(250000) reached. 0.9258677862535478 0.0355698852881687 INFO: WcgLearnLimit(250000) reached. 1.5630310083088261 0.0023840340255106 INFO: WcgLearnLimit(250000) reached. 1.7064953066330020 0.0507768284696795 INFO: WcgLearnLimit(250000) reached. 1.2349308277935052 0.2525758724696061 INFO: WcgLearnLimit(250000) reached. 1.3916346945716214 0.0331879766317797 INFO: WcgLearnLimit(250000) reached. 0.4134370873505162 0.0157807744554930 INFO: WcgLearnLimit(250000) reached. 0.8396884894027608 0.0574902915832354 INFO: WcgLearnLimit(250000) reached. 0.9526968732461683 0.0643282959490534 INFO: WcgLearnLimit(250000) reached. 1.0081183659285671 0.0020207185020809 INFO: WcgLearnLimit(250000) reached. 1.5758918940045987 0.1997952868405264 [09:51:09] Exiting PermutateGeneSignature [09:51:09] Writing final output [09:51:09] Closing Output Stream [09:51:09] Cleaning up Result.out = 19961.000000 Run complete, CPU time: 6319.006078 09:51:09 (21039): called boinc_finish </stderr_txt> ]]> |
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pvh513
Senior Cruncher Joined: Feb 26, 2011 Post Count: 260 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
I received 72 beta WUs, of which 44 have been returned so far. All 44 are still in PV jail. Is validation on hold? I saw that for many WUs two results are in, but validation hasn't happened yet...
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LCB001
Advanced Cruncher CANADA Joined: Oct 14, 2009 Post Count: 69 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
I seem to have a stuck WU here.
----------------------------------------Beta_Beta_9999961_0096 CPU time at last checkpoint: 01:47:32 CPU time: 14:12:57 Elapsed time: 14:13:21 stderr; Commandline = projects/www.worldcommunitygrid.org/wcgrid_beta17_7.29_windows_x86_64 -SettingsFile BETA_9999961_0096.txt -DatabaseFile dataset-GDS2771-v1.txt Settings File //Master Settings Template //Project Details DateOfDesign = 08052013 Designer = Mike WorkOrderID = 1426 //Work Unit Parameters DatasetID = GDS2771-v1 NumberOfGenesInStartingSignature = 15 NumberOfGenesInSignatureMin = 12 NumberOfGenesInSignatureMax = 18 //Frequency/Group Vector for Genes //UseFrequencyVector = 0 GroupVectorValues = {A}{A}{A}{A D}{A}{A}{A F}{A}{A}{A}{A}{A}{A}{A}{A}{A E}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A} Shortened out to make it easier {A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A}{A} ExplicitStartingGeneSignatures = D E //Starting Gene Signature //Options are: explicitGeneSignatureSearch, explicitFrequencyRandomSearch, // randomFixedLengthSearch, randomSearch, sequentialSearch, StartingGeneSignatureAlgorithm = explicitGeneSignatureSearch //For random and random fixed length, explicit frequency search and explicit frequency //fixed search, define how many starting gene signatures to start with SearchAlgorithmNumberToCreate = 304 //Only for sequential search, define the starting position SearchAlgorithmSequentialStartPosition = 304 //Permutation Algorithm //Permutations can have two sets of groups, in most cases only one is used. //e.g. A user can define a group to permutate (group A) and another to //pull from RunPermutationAlgorithm = 1 PermutationGroups = F PermutationGroupsForReplacement = F //Options are: // insertOneGeneFromGroup, insertOneGeneRandomly, insertEnumerateFromGroup, insertGreedyRandomly // insertGreedyFromGroup, insertSimulatedAnnealingFromGroup, insertSimulatedAnnealingRandomly, // deleteOneGeneFromGroup, deleteOneGeneRandomly, deleteEnumerateFromGroup, deleteGreedyRandomly, // deleteGreedyFromGroup, deleteSimulatedAnnealingFromGroup, deleteSimulatedAnnealingRandomly, // replaceFromGroupToGroup, replaceFromRandomlyToRandomly, replaceFromRandomlyToRandomlyGreedy, // replaceFromRandomlyToRandomlySimulatedAnnealing, replaceFromRandomlyToGroup, // replaceFromRandomlyToGroupGreedy, replaceFromRandomlyToGroupSimulatedAnnealing, // replaceFromGroupToRandomly, runRandomGreedy, runRandomSimulatedAnnealing, PermutationAlgorithm = replaceFromRandomlyToRandomlySimulatedAnnealing //Number of permutations to run PER starting gene signature PermutationsNumIterations = 304 //Insert Delete Replace OptimizationAlgorithmFrequency = 0 0 1 NReps = 10 // VMethod : string (CV) : validation method {LOO - leave-one-out validation, CV - cross-validation, OOB - "out of bag" validation, NFCV - N-fold CV} VMethod = LOO //VMethod = CV //VMethod = OOB //VMethod = NFCV ModelType = SVM SvmArgs = "-v 0 -c 0.1 -t 2 -g 0.1 " MinFitness = -1 RSeed = 4000 SvmLearnLimit = 750000 [22:18:30] Initializing [22:18:36] Running [22:18:36] EvaluateFitnessOfStartingGeneSignatures 2 [22:18:45]: Computing pass 0 [22:46:03]: Computing pass 1 It seems to be stuck at pass 1. The WU is still running if you need more... ![]() |
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JmBoullier
Former Community Advisor Normandy - France Joined: Jan 26, 2007 Post Count: 3715 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
LCB001,
----------------------------------------What you show looks like what I have reported just before yours. Are you also seeing round percentages, obviously increasing more slowly? |
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LCB001
Advanced Cruncher CANADA Joined: Oct 14, 2009 Post Count: 69 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
LCB001, What you show looks like what I have reported just before yours. Are you also seeing round percentages, obviously increasing more slowly? Oops, knew I forgot to mention something. Percentage done is Not incrementing on this one, seems stuck at 88.486% at least for the last couple of hours since I started keeping an eye on it. If you need anything else just holler... ![]() |
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Former Member
Cruncher Joined: May 22, 2018 Post Count: 0 Status: Offline |
For result name
BETA_ BETA_ 9999965_ 0897_ 0-- I unchecked "leave applications in memory while suspended." and closed the BOINC manager. When I restarted my Window 7 machine's BOINC manager I waited an hour & exited a second time. Both times the application jumped to 0.500 but then recovered - just like most people are reportiong I thought of this as rugged testing but then I started worrying that perhaps my result would actually confuse the tech and waste his or her time - so I am posting my actions just in case. |
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ccandido
Senior Cruncher Joined: Jun 22, 2011 Post Count: 182 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
WU BETA_ BETA_ 9999960_ 0738_ 0--
----------------------------------------did not return to normal from the 0.5% progress thing and did not make any checkpoint ![]() ![]() |
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ccandido
Senior Cruncher Joined: Jun 22, 2011 Post Count: 182 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
I received 72 beta WUs, of which 44 have been returned so far. All 44 are still in PV jail. Is validation on hold? I saw that for many WUs two results are in, but validation hasn't happened yet... Yes, if you read previous messages from uplinger you will see that validation is on hold. You'll have to wait a bit more, as I think it will start to validate today ![]() ![]() |
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branjo
Master Cruncher Slovakia Joined: Jun 29, 2012 Post Count: 1892 Status: Offline Project Badges: ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
No problem so far, shrubbing on Win7 64-bit i7-3770 7.2.39 and Mac OS X 10.9.2 i5-2500S 7.0.65
----------------------------------------![]() Re "0,5% case" after rebooting: it stucks on it regardless on checkpoint for majority of WU's. Even when I rebooted with tasks without checkpoints, they started at 0,5% ![]() Tasks on Mac OS X went to normal percentage muuuuuuch sooner than those on Windoze ![]() Cheers and good luck ![]() ![]() Crunching@Home since January 13 2000. Shrubbing@Home since January 5 2006 ![]() [Edit 1 times, last edit by branjo at Feb 26, 2014 10:16:04 PM] |
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