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uplinger
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

Thanks for the observations! I'm adding a few more batches.

Thanks,
-Uplnger
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hchc
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

No issues on Win10 or Debian Linux boxes on older or newer CPUs.

Win10
Virtual memory size: 192 MB
Working set size: 194 MB

Linux
Virtual memory size: 168 MB
Working set size: 110 MB
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  • i5-7500 (Kaby Lake, 4C/4T) @ 3.4 GHz
  • i5-4590 (Haswell, 4C/4T) @ 3.3 GHz
  • i5-3570 (Broadwell, 4C/4T) @ 3.4 GHz

[Apr 24, 2020 4:22:57 AM]   Link   Report threatening or abusive post: please login first  Go to top 
hchc
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

May I politely point out a cosmetic/factual error in the project graphics?

COVID-19 is a highly communicable virus that can cause severe respiratory problems, even death.

Would prefer to see something like:
SARS-CoV-2 is a highly communicable virus that leads to COVID-19, which can cause severe respiratory problems, even death.

or if you want to leave the virus's name out, at least do:
COVID-19 is caused by a highly communicable virus that can cause severe respiratory problems, even death.

I realize that most laypeople and media outlets only know about the Coronavirus Disease 2019 ("COVID-19"), but we might as well set the record straight in the project graphics since it's incorrect as it's currently written. When this project goes live, I'll be reaching out to some people in the scientific and medical community to install WCG and want to leave a good first impression.


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  • i5-7500 (Kaby Lake, 4C/4T) @ 3.4 GHz
  • i5-4590 (Haswell, 4C/4T) @ 3.3 GHz
  • i5-3570 (Broadwell, 4C/4T) @ 3.4 GHz

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[Edit 4 times, last edit by hchc at Apr 24, 2020 4:31:18 AM]
[Apr 24, 2020 4:25:51 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Speedy51
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

There seems to be 4 "steps" per 2% progress, for a total of 200 steps
Out of curiosity where do you see how many steps a task has done? I can only find where it says how many docking's have been completed. In case it makes a difference I am running Windows 10 64 bit Thanks in advance
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[Edit 2 times, last edit by Speedy51 at Apr 24, 2020 4:42:57 AM]
[Apr 24, 2020 4:33:59 AM]   Link   Report threatening or abusive post: please login first  Go to top 
Former Member
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

The Betas I have are needing about 106 MB RAM (ARP need 330 MB RAM for comparison).

There is a big difference in runtime. One was finished after a few minutes, one has 60% after 50 Minutes and one 10% after 50 Minutes.

No errors so far.

Edit: just to write it more understandable
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[Edit 1 times, last edit by Former Member at Apr 24, 2020 5:16:23 AM]
[Apr 24, 2020 5:14:47 AM]   Link   Report threatening or abusive post: please login first  Go to top 
DrMason
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

There seems to be 4 "steps" per 2% progress, for a total of 200 steps
Out of curiosity where do you see how many steps a task has done? I can only find where it says how many docking's have been completed. In case it makes a difference I am running Windows 10 64 bit Thanks in advance


Hey Speedy51, good to see you around, hope you're well. What I did is I watched the progress bar, and noted when it increased the progress percentage. I don't know how many calculations or dockings are being completed for the boinc manager to decide "yep, it's time to increase the progress percentage". But since I run at pretty stable all-core boost frequencies, 24/7, it should take about the same amount of time if the same number of calculations are being done. At least in theory. I saw very regular periods of time between increments of progress, so it seems like its roughly the same number of calculations or dockings per increment of progress. So, I called that progress a "step". So, a task with 200 "steps", the progress percentage will increase 200 times over the course of the unit, and since it is very regular, that can also allow you to estimate the time to completion. There's probably a better word for it, so if someone could enlighten me, I'll use the clearer one biggrin

Since it looks like the devs are still looking for data, I'll put down the glut of information I was able to take down. All the machines below are running Linux Mint, latest updated versions (none of my windows machines have caught any yet). Numbers are: workunit name after the "TEST" part, Virtual Memory, and Working Set Size memory usage in MB. Then in parentheses, I will denote whether it was an estimated short (under 1 hr), medium (1-7.9 hrs), or long (8+ hrs) running unit.

Dual epyc 7301 system, 64 gig ram, 64 concurrent threads:
002_0021: 168.25 /66.30 (short)
002_1248: 168.25 / 94.96 (short)
002_0132: 178.85 / 113.94 (short)
002_0143: 178.85 / 104.46 (short)
002_1105: 178.85 / 109.19 (short)
002_0018: 178.91 / 112.82 (medium)
003_0171: 178.85 / 113.94 (medium)
002_1106: 178.85 / 113.65 (long)
003_1412: 168.25 / 104.53 (long)
003_0149: 168.37 / 104.59 (long)
Other notes: I suspended all my tasks, ran all the COVID-19 betas at once (about 20 of them), and then immediately after running all the betas, resumed my other tasks. I did not observe a major change in performance like if I ran a bunch of MIP1 tasks at once, or ran all ARP1 tasks at once, so I'm not seeing enough L3 cache use to cause a knock-on effect.

Ryzen 7 1700 system, 16 gig ram, 16 concurrent threads:
003_1199: 179.02 / 114.27 (medium)
Other notes: about a 34 second "step" time

Ryzen 5 3600 system, 16 gig ram, 12 concurrent threads:
I wasn't able to access and take down the information in time before the unit finished. It only lasted 46 seconds. Finished fine though.

Final ranges for VSM: 168.25 - 182.85
Final ranges for WSS: 66.30 - 116.88
I didn't see much of a correlation between VSM and WSS usage, except that in very, very short units (under 2 minutes), there were some that had numbers on the lower edge of the range. But some very short units had memory figures in line with medium or long units, so the correlation between VSM and WSS and the length of the unit is pretty weak.
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DrMason
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

I will also +1 what hchc said about the screen saver. This would be exactly the kind of thing that bad faith actors will latch onto to try to troll. "They say they're going to help, but how can they if they don't even know the difference between SARS-CoV2 and COVID-19? trololololol"
Of course that argument is pure bs, but it will be made without the correction, and it's best to avoid the headache haha
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Pete Broad
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

4 of my 5 Android tasks are marked as invalid, the other one is still pending verification.

Pete
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Warped@RSA
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

Here's info on one of my units:

Application Beta 7.09
Name BETA_OPN1_TEST002_1305
State Running
Received 2020/04/24 05:47:40 AM
Report deadline 2020/04/28 05:48:15 AM
Estimated computation size 33 991 GFLOPs
CPU time 00:09:53
CPU time since checkpoint 00:01:02
Elapsed time 00:09:56
Estimated time remaining 02:08:26
Fraction done 4.002%
Virtual memory size 193.08 MB
Working set size 112.08 MB
Directory slots/6
Process ID 12336
Progress rate 26.280% per hour
Executable wcgrid_beta28_autodock_7.09_windows_x86_64
----------------------------------------
Dave


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PMH_UK
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Re: OpenPandemics - COVID 19 Beta Test April 20, 2020 [ Issues Thread ]

Will the betas and regular WUs run on XP machines?

Got 2 on XP 32 bit, both failed as below:

Result Name: BETA_ OPN1_ TEST002_ 1112_ 0--
<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
couldn't start app: CreateProcess() failed - (unknown error)</message>
]]>

May be able to patch the app as before.

Paul.
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Paul.
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